FMO02879.5prime Sequence
1108 bp (1048 high quality bases) assembled on 2008-06-10
> FMO02879.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAATCGAGTG
GGCACCACTGCGGGTTCCTCTGGAACGCCGACTGCAGATACTGGTCACGG
CCTTTTTCACCTCCATGCTGCTGATACTATTGTCAGTTTCCTTCCTTTTG
GTAGCTGGATCACTGATCTACGGAGGTCTTTTGGTGCGTAGTCTGATGGT
AACTTACTTGGCCTACGTCTTTGTGCACCACAAGAAAACCCAATCCGTTG
TGGATGGCAATGGCTGGATGATAACACGCACCAACCTTTTGCATCGCCAC
TATCGTGATTACTTTCCCGTGGAGCTGGTGAAAACAGCCGAACTGCCAGC
TACTAAGAACTACATCTTGGCCAGCTTTCCCCACGGAATTCTGGGCACAG
GCATTGGCATTAACATGGGCTTGGAAATCTCCAAGTGGCTGGAGCTATTC
CCCCAAGTGCGTCCCAAACTGGGCACTCTGGATCAGCATTTCCATGTTCC
GTTCATGCGTGAGGTCCTCCGCTGCTGGGGTCTGGTGTCAGTGTCCAAAG
AGGCGCTGATCCGTATGCTCAGCAAGTCAAATGATCCCAAGCACAAGGAT
AATCGGGATGGTTTCACCTCCAATGCGGTGGCCATTCTGGTTGGCGGTGC
CCAGGAAGCCATGGACTCTCATCCTGGGCAGTACATTTTAACCTTGAAGA
ATAGGAAAGGCTTCGTGCGAATGGCCATTAGAACGGGCTCATCGATTGTT
CCTTCATTTTCCTTTGGAGAGGTGGACATTTTCGATCATGTGGCAAATCC
CCCCAACTCGCTGCTCCGACGGTTTCAGGACTTTGTCAAGAAGCTCACCG
GAGTCTCTCCGCTGATTCCTGTGGGCCGCGGATTCTTCAACTACACCTTT
GGCTTCCTCCCATTCCGACGACGCATTGTCCAGTTGTTGGTGCTCCCATC
GATGTTGTTAGACGAGCACCCAGACTCGGAGTATGTGATAAGTGCATGAC
AGGTCATTGAGTCGCTGAGAAGTTATTCGATCAGTACAAGAACAGTACTT
GAGAATCGAGAGTGCCACTTCTAGTTGTACCCGCCAGCTTTCTAGAACAT
TCGTTGGC
FMO02879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1942-RA | 1305 | CG1942-RA | 182..1238 | 34..1080 | 4945 | 98.6 | Plus |
| CG1941-RD | 1203 | CG1941-RD | 235..1023 | 208..992 | 1190 | 77.7 | Plus |
| CG1941-RC | 1678 | CG1941-RC | 710..1498 | 208..992 | 1190 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7713304..7713646 | 395..737 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 7713703..7713898 | 737..932 | 965 | 99.5 | Plus |
| 2R | 25286936 | 2R | 7713106..7713238 | 263..395 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 7712759..7712890 | 34..165 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 7712950..7713048 | 165..263 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 7715890..7716199 | 407..716 | 485 | 77.1 | Plus |
| 2R | 25286936 | 2R | 7711079..7711410 | 400..731 | 430 | 75.3 | Plus |
| 2R | 25286936 | 2R | 7711481..7711671 | 742..932 | 385 | 80.1 | Plus |
| 2R | 25286936 | 2R | 7716283..7716473 | 742..932 | 280 | 76.4 | Plus |
| 2R | 25286936 | 2R | 7713962..7714071 | 936..1039 | 275 | 91.8 | Plus |
| 2R | 25286936 | 2R | 7710879..7710980 | 294..395 | 225 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-28 19:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 730..681 | 115 | 70 | Minus |
FMO02879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:56 Download gff for
FMO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1942-RA | 177..1217 | 29..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:07 Download gff for
FMO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1942-RA | 177..1217 | 29..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:07 Download gff for
FMO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7712760..7712890 | 35..165 | 100 | -> | Plus |
| 2R | 7712951..7713048 | 166..263 | 100 | -> | Plus |
| 2R | 7713107..7713238 | 264..395 | 100 | -> | Plus |
| 2R | 7713305..7713646 | 396..737 | 100 | -> | Plus |
| 2R | 7713704..7713903 | 738..936 | 99 | -> | Plus |
| 2R | 7713963..7714094 | 937..1059 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:56 Download gff for
FMO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3601209..3601408 | 738..936 | 99 | -> | Plus |
| arm_2R | 3601468..3601599 | 937..1059 | 91 | | Plus |
| arm_2R | 3600265..3600395 | 35..165 | 100 | -> | Plus |
| arm_2R | 3600456..3600553 | 166..263 | 100 | -> | Plus |
| arm_2R | 3600612..3600743 | 264..395 | 100 | -> | Plus |
| arm_2R | 3600810..3601151 | 396..737 | 100 | -> | Plus |
