FMO02882.5prime Sequence
1248 bp (1053 high quality bases) assembled on 2008-06-10
> FMO02882.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCCAAAAGA
AAGCCGTCACCGTCAAAGGAAAAAAAGCTACGAATGGAGAGGAAAAGCCT
TTGGCCAAACGGGTAACCAAGTCCACAAAGGTACAGGAAGAGGAGACAGT
AGTCCCCCAATCGCCTTCCAAAAAATCCAGAAAACAGCCTGTTAAAGAAG
TGCCGCAGTTCAGTGAAGAGGACGAGTCTGATGTGGAGGAGCAAAATGAC
GAGCAGCCAGGGGACGACAGCGACTTTGAGACCGAAGAGGCAGCGGGCTT
AATTGACGACGAGGCTGAGGAAGATGAAGAGTACAATAGTGACGATGAGG
AAGATGATGATGACGATGAGTTGGAGCCTGGTGAGGTTTCCAAAAGTGAA
GGCGCGGATGAGGTAGATGAATCCGATGATGATGAAGAAGCGCCTGTAGA
GAAGCCAGTTTCCAAGAAATCAGAAAAAGCCAACTCTGAAAAGTCCGAAG
AAAATAGAGGAATTCCAAAAGTAAAGGTTGGCAAGATTCCGCTGGGAACG
CCAAAAAACCAGATCGTTTTTGTCACAAACCTACCAAACGAGTATCTCCA
CAAGGACTTGGTCGCATTGTTCGCCAAGTTCGGACGACTTTCCGCTTTGC
AGCGTTTCACTAATTTGAATGGCAATAAATCAGTTCTCATTGCCTTTGAT
ACGTCAACTGGAGCAGAAGCTGTTCTGCAGGCTAAGCCTAAAGCGTTAAC
CCTTGGAGACAATGTTTTGTCTGTGTCCCAACCGAGAAATAAGGAAGAGA
ACAACGAACGCACGGTGGTGGTTGGCCTGATTGGACCTAATATTACCAAG
GACGACTTAAAAACCTTTTTTGAGAAGGTAGCTCCCGTGGAGGCGGTGAC
TATATCCAGTACCGCCTCATGCCCAGAGCTTTTGTACGTTTGGCGTCGGT
CGATGACATACCGAAAGCTCTTAAACTGCATAGCACTGAGCTGTTTTCTC
GCTTATAACGGTTCGTCGGATCTCACAAGAATCGATTTCACGTACAGTGA
ACTTACTGGTTGTCGGAATGTGGCAAACCGAGTCTACAGGCTTCCGACGC
TCTAAAAAAGATTCCAAAAATTGGGGATTGTGAAAAAATCGACGTGTGGG
TGCAGCAAGGCAGTTTAGCCTTTGTACAGTTCAGCGATCCGATGCCCCAC
GAGCTTAAACACACCTCAACGTAAGAAACCGGCTTTAATAATAGATGT
FMO02882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 116..1313 | 38..1221 | 5235 | 96.8 | Plus |
| mod-RA | 2287 | CG2050-RA | 449..1646 | 38..1221 | 5235 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053622..32054091 | 590..1056 | 2185 | 99.1 | Plus |
| 3R | 32079331 | 3R | 32053240..32053555 | 275..590 | 1565 | 99.7 | Plus |
| 3R | 32079331 | 3R | 32052735..32052977 | 38..280 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:57 has no hits.
FMO02882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:02 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:19 Download gff for
FMO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 443..1604 | 32..1183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:51 Download gff for
FMO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 443..1604 | 32..1183 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:51 Download gff for
FMO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32052729..32052977 | 32..280 | 99 | -> | Plus |
| 3R | 32053246..32053555 | 281..590 | 100 | -> | Plus |
| 3R | 32053623..32054225 | 591..1183 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:19 Download gff for
FMO02882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27878451..27878699 | 32..280 | 99 | -> | Plus |
| arm_3R | 27878968..27879277 | 281..590 | 100 | -> | Plus |
| arm_3R | 27879345..27879947 | 591..1183 | 95 | | Plus |
