FMO02883.5prime Sequence
1228 bp (1050 high quality bases) assembled on 2008-06-10
> FMO02883.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGCTGCAAG
TGGAGAACTGTCCAAGAATGAGCTAAAGCGTCGCCTGAAGGCCGAGCAAA
AGGCCAAGGAGAAGGCTGAGAAGGCGGCCGCTGCGCCGGCGGAAAATACT
GCTGGCAAGAAGAAGAGCAGTGCCGCCGAGGAGGAGGAGATCTCGCCGAA
TGAATACTTTAAGCTGCGCTCCGCCGCCGTTCAGGAGCTGAAACGTTCAC
CCGCAACGGATCCCTATCCACACAAGTTCCATGTGAGTAGCTCGCTGGAA
GACTTCATTGCCAAGTACGAGAACAGCCTCAAGGAGGGCGAGACCCTGGA
GAATGTCAAACTGAGCGTGGCTGGGCGCGTGCATGCCATACGCGAGTCGG
GCGCCAAGCTCATTTTCTACGATCTGCGCGGCGAGGGCGTCAAGGTGCAG
GTGATGGCCAGCGCTAAGTCCTACAAGTCGGAGGCGGATTTCGAAATCGA
TACGTCCAAATTGCGACGTGGTGATATCATCGGCGTTGTCGGACATCCCG
GCAAAACCAAGAAGGGTGAACTGTCCGTTATGCCCAGCGAGATCAAGCTG
CTATCGCCCTGTCTACACATGCTGCCCCATCTGCATTTCGGGTTGAAGGA
CAAGGAGACGCGCTACCGCCAGCGCTATCTTGATCTCATTCTCAACAACA
ATGTGCGAGAGAAATTCCAGATCCGTGCCAAGATCATCTCGTACGTGCGT
CAGTTCCTGGATCGTCTGGGTTTCCTGGAGATCGAGACGCCCATGATGAA
CATGATCGCCGGTGGAGCCACTGCCAAGCCCTTCGTGACGCATCACAATG
ACCTCAAGATGGATCTGTTCATGCGCATTGCTCCGGAGCTGTATCACAAG
ATGCTGGTGGTGGGTGGACTCGATCGTGTGTACGAGATCGGACGGCAGTT
CCGCAACGAGGGCATCGACCTCACCCACAATCCTGAATTCACCACGTGCG
AGTTCTACATGGCGTATGCCGACTACGCTGACATTATGGATATCACGAGC
AGTGGTCTCGGATGGTGAAGCGATCCGTGCTTCTACAGTCATCTATCATC
GAAGTTCAGAGGGACTGAGCAGAACTTGACTACCCGCCTTAGTCGCGTAT
CCATGATCAAGCCCTGAAAGAGAGAGACGTTCCAGGATGAGTTCCCGGTC
GAACTTAATCCCAGAAACAAATCATATC
FMO02883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RA | 1969 | CG12141-RA | 134..1276 | 36..1160 | 5240 | 98 | Plus |
| Aats-lys-RC | 2160 | CG12141-RC | 358..1467 | 69..1160 | 5075 | 97.9 | Plus |
| Aats-lys-RB | 2223 | CG12141-RB | 421..1530 | 69..1160 | 5075 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9607629..9608292 | 732..69 | 3320 | 100 | Minus |
| X | 23542271 | X | 9607254..9607569 | 1046..731 | 1580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:07 has no hits.
FMO02883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:58 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:04 Download gff for
FMO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1290 | 29..1173 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:04 Download gff for
FMO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1290 | 29..1173 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:04 Download gff for
FMO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9607108..9607567 | 733..1173 | 94 | <- | Minus |
| X | 9607629..9608292 | 69..732 | 100 | <- | Minus |
| X | 9608719..9608757 | 29..68 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:04 Download gff for
FMO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9501141..9501600 | 733..1173 | 94 | <- | Minus |
| arm_X | 9501662..9502325 | 69..732 | 100 | <- | Minus |
| arm_X | 9502752..9502790 | 29..68 | 92 | | Minus |
