Clone FMO02885 Report

Search the DGRC for FMO02885

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:28
Well:85
Vector:pMK33-CFH-BD
Associated Gene/Transcriptligatin-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02885.5prime Sequence

379 bp (361 high quality bases) assembled on 2008-06-10

> FMO02885.5prime
ATAGCATAAAAAAAACGAAGTTATCAGTCGACATGTTTCTCAAGCAACCT
GAAAAAAGAGCAGTGCTGCCCTCAAGGGATCCGATAGCAAGAAGTTCCGG
CAGCGCGTCTAGGCGGCGTTCCTCTTCTGTAAACGTGGATCAGCTGGTGC
CGGCGAAGGCGGCGGTGACCCAGGTGAAGATCCTAACGCACGGCGGTGTT
CAGAGCATGGTCTACTGCGTGGACAAGTTGCCTTTGTTCTTCGAGCTGGA
CGGCGGTCAACTTGTGCCCACCCTGTACACCCTGTGGATCGTTCCGGACA
TCCTGCCCTATTTCACCACCCACGAGGGTGTGTTACCCAAGCTGACGAAC
GGATTTTATCTCATGCTGCCCGGAGTGGT

FMO02885.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
ligatin-RA 1841 CG31426-RA 130..452 56..379 1415 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29151343..29151665 379..56 1390 96 Minus
Blast to na_te.dros performed on 2014-11-28 20:08:52 has no hits.

FMO02885.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:59 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:09 Download gff for FMO02885.5prime
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 101..452 25..379 93   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:29 Download gff for FMO02885.5prime
Subject Subject Range Query Range Percent Splice Strand
ligatin-RA 101..452 25..379 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:29 Download gff for FMO02885.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29151343..29151694 25..379 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:09 Download gff for FMO02885.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24977065..24977416 25..379 92   Minus