FMO02887.5prime Sequence
1214 bp (1040 high quality bases) assembled on 2008-06-10
> FMO02887.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTTCTTCGGA
TCCAACACGTCGCTGGGAGCAACAAGCACGCCGGCCAAAACAACCGGTGG
CCTCTTCGGATCGCCGTTTGGAGGCACAGCTGCAACCAGCCAGCCAGCAC
CCGCTTTCGGAGCACAGGCCACATCGACTCCGGCTTTTGGCGCCCAACCG
GCGACTTCTGCCTTCGGAGCAGGTTCCGCCTTTGGAGCAACCGCTGCAGC
CCCGGCTTTTGGAGCCGCCACAGGAACTTCTGCCTTTGGCGGCTCCGCCT
TTGGCAGTACTCCGGCATTTGGTGCGGCGACAACCACAACTGCGGGCACG
GGTTTGGGAGGAGGCGGTTTCGGCGGATTTGGAGCAGCTCCGGCAACAAG
TCAGGCCGGTCTGTTCGGCGCTCCAGCGACTAGTGCAGCACCACCAGCTT
TTAGCGGATTCGGCCAACAGGCAGCTGCGAGTACAGCGCCAGCAAGTGGA
TTTTCAGGCTTTGGCACAACCACAACGTCGGCACCTGCTTTTGGTGGCTT
TGGCACCAGCCAGTCCACTGGCTTTGGGGGCGGAGCCTTCGGATCCACGT
TCGGAAAACCAGCGAATACAACAGTTACGCCGGGATTTGGTGGATTCGGA
GGCACCAGTTTTATGCTTGGACAGCCGCAACAGCAGCCAGCGCCCATATC
GGCTGACGAGGCGTTTGCCCAATCCATTCTGAATGTATCCATTTTCGGGG
ATGAACGGGACAAAATAGTGGCCAAATGGAACTACTTGCAGGCTACGTGG
GGCACTGGGAAAATGTTTTACTCCCAGAGTGCGGCACCGGTAGACATTAC
GCCGGAGAACGTGATGTGCCGGGTTCAAGGCCATAGGCTACAGTCGTATG
CCGGGCAAGGATAACAGTTGGGACTGGTGGCTCTAACTTCTGCAGAGAAC
TCTCAGCTGTCAGCCACACCAGCACAAGTGATTCAACGCTTCACAGTTAT
TCGGCAGCAAGCCCAACATGCTTGTTCCAATAGATTCATCAGAGTTGGAG
AACAAAAGTGCAATTGTATTTATGGTCAGGAGAACTTCAACATGCCTCCA
CGAAGCAGCGTTACTTGGCACCGAACTCTCCCAACTACTATCAGCGACGC
CGTGAACAGTCTATTCTAGGTGTGGAGCTGGTCTTGGATATCCCGACGGA
GCTACATTGAGGAG
FMO02887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 2048 | CG8831-RA | 163..1275 | 35..1130 | 4995 | 97.7 | Plus |
| CG43204-RA | 641 | CG43204-RA | 227..282 | 90..35 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12429954..12430460 | 597..91 | 2535 | 100 | Minus |
| 2R | 25286936 | 2R | 12429529..12429894 | 962..598 | 1685 | 99.2 | Minus |
| 2R | 25286936 | 2R | 12430882..12430937 | 90..35 | 280 | 100 | Minus |
| 2R | 25286936 | 2R | 12429394..12429471 | 1037..963 | 210 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:45 has no hits.
FMO02887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:59 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:55 Download gff for
FMO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 163..1291 | 35..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:22 Download gff for
FMO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 163..1291 | 35..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:22 Download gff for
FMO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12429528..12429894 | 598..962 | 98 | <- | Minus |
| 2R | 12429954..12430460 | 91..597 | 100 | <- | Minus |
| 2R | 12430882..12430937 | 35..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:55 Download gff for
FMO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8317033..8317399 | 598..962 | 98 | <- | Minus |
| arm_2R | 8317459..8317965 | 91..597 | 100 | <- | Minus |
| arm_2R | 8318387..8318442 | 35..90 | 100 | | Minus |
