FMO02890.5prime Sequence
1226 bp (1044 high quality bases) assembled on 2008-06-10
> FMO02890.5prime
CAGTCGACATGGCTGATACTCCGGATGACTATTGGTGTCGCATCCCGGAG
CTACTCGACTTGCCCCTGGAGCAGCGAAAATCGCTGTCCATACCCAAGGA
ACTGGATAACGACGAACTGGTCTACAGCAAATGTTATACCTACGGAGTCA
ACTGGACGCAGCTCCTTGAATCGGGGGAAGAGGATGACCTGACGACCATG
GAGCCGAATGCCAGTTGGCCACTGATCAAGTGCCCCCAGGGATGGGAGTA
CAACACAAGCGTCGTCTGGTCCTCCATTGTGATTGATTTCGATCTAGTGT
GCGATCAGGATATTTATCCTACGATTGGATTGGCTGCTCTTAATACTGGC
GGTCCAGTGGGAGTCTATCTTTTCGGATTACTCAATGATCGTGGTGGACG
AAGGCTCTCCTATTTCGTCTGTTTGGCCACTTTGCTGGCTGGCAGCCTAA
TGACTTCGCTGAGCAAGGATTTTTGGACTTGGGCCGGCAGTCGAGTCATC
GTAGGACTGACCATTCCAGCTGTCTACCAGATACCATTTATAATATCTCT
GGAACTGGTGGGTGAAAACTATCGATCCTTCGTGACTGTGATGACGTGCA
CCTTTTACACTTCGGGCATCATGCTCCTGTCCGGCGTCACTTATCTGGAG
CGGGATTGGGTGCGCCTCTCCTACATCACATCCCTGCCGTTTTACGCCTA
TTTCCTGTACATGTTCGTCATGCCGGAATCACCGAGATGGCTTTTGATGC
GCGGTCGCCTGGAGGAGGCTCTCAAGATTCTGGAGCGCATGGCAAAGGTC
AATGGCAGAGAGTTTCCCGAGGCTGTGCATCTCAAGCTGGAGGCTCAGAT
ACGACGGGATAAGCTCAAGAAGCAAAGAAAAGATGGCCAATGTGGGGCTA
GCAGATCTCTGTCGCACCCCCATATGCGCTTAAAGACCATCCTAATCACG
CTGAGTTGGTTTGCCAATGAGACGGTTATCTGGGACTCAGTTATTACGGA
CCAGCGCTGGGCACCATCAGTATGTCAGCTTCTTTCTGTCGGCTGTTGTG
GCTGCGAGCTATTTGTGCCGCTGTACTTCATGGATACCTGGGGAGAAGAT
GGCCATTGAACCTTATACAATGAAATTGGGTGGCGTGACTGGTGGATCCT
TAATGGTACGATAGCTGGATAGAACTTGGGGCGTGATTCTAGAATACCCA
GCTGTGTATATGCGCTCTATCGGTGG
FMO02890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 253..1389 | 9..1137 | 5360 | 98.7 | Plus |
| CG9317-RA | 2523 | CG9317-RA | 253..1389 | 9..1137 | 5360 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20728448..20729020 | 1109..547 | 2405 | 97.9 | Minus |
| 2L | 23513712 | 2L | 20729076..20729334 | 546..288 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 20729483..20729666 | 287..104 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 20729876..20729972 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:48 has no hits.
FMO02890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:59 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:22 Download gff for
FMO02890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1401 | 1..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:03 Download gff for
FMO02890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1401 | 1..1148 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:03 Download gff for
FMO02890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20728429..20729020 | 547..1130 | 97 | <- | Minus |
| 2L | 20729076..20729334 | 288..546 | 100 | <- | Minus |
| 2L | 20729483..20729665 | 105..287 | 100 | <- | Minus |
| 2L | 20729877..20729981 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:22 Download gff for
FMO02890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20729076..20729334 | 288..546 | 100 | <- | Minus |
| arm_2L | 20729483..20729665 | 105..287 | 100 | <- | Minus |
| arm_2L | 20729877..20729981 | 1..104 | 96 | | Minus |
| arm_2L | 20728429..20729020 | 547..1130 | 97 | <- | Minus |
