FMO02891.5prime Sequence
1273 bp (991 high quality bases) assembled on 2008-06-10
> FMO02891.5prime
ACTTCGTATAGCATACTTTATACGAAGTTATCAGTCGACATGACAACGCC
CACGCGCGCCACCCTGGAAAAGGCTCTGAAAAGCGACCAGAAGCTTGTGA
ATTCCGCCACACAGATAGCCAAGGATCTGACCGCCAAGGCATATGACATA
TCTGCTCTGGCCGAGGCACTGGGCTTCGCCCTGTCCTCTCCGGACATGGA
GGAGCGTGTGGCCGGAACCAACTTGCTCTCCGCCGTGTTGATAGCACTGC
CCCAGGATCTGCTGCAAGAGCGGCAGCTGGAGTTCCTCAGCACCTTTTAC
ATGGACCGCCTGCGCGACCATCACAACGTAATGCCAGCCATTATCGATGG
AATCGACGCCCTGGTTCACATGAAAGCTCTACCGCGCGCCCAGATTCCCC
AGATTCTGCAGTCATTCTTCGAGCACACCACCTGCCAGTCGCAGACGCGG
AGCGACCGCACCAAGCTGTTCCACATTTTCCAGTACTTGACGGAAAACTT
CCAGGACGAGCTGCAAGCGATGGCCGGTGACTTCGTCTACGGCCTGATCA
ATTCCATTGACGGCGAGCGTGACCCCCGCAACCTTGACATCATTTTCAGC
TTCATGCCCGAGTTCTTGTCAACGTATCCGCTGCTGCATTTGGCCGAAGA
GATGTTTGAGATCTTTGCGTGTTACTTTCCAATCGACTTTAATCCCAGCA
AGCAGGATCCAGCGGCCATAACCCGTGATGAATTGTCCAAGAAGTTGACT
AACTGCCTGGTAGCCAACAACGAATTCGCTGAGGGCACAGTGGTACTGGC
CATAGAAAAGCTGGAGAGTGAGTTGCTGGTTGCCAAACTGGGACTCCATA
GAACTGCTGCACAAGCTGCCGTGAAGTTCCCGCCTTCCGTTCTGGAGCCG
CACTCGATCAGATATGGCAGGCTCTGAAAAAGAGACTTTTCCAGGAAATG
ACAATGAGGAAGATAACTGAAAGCTTCCCTTAAGGCGTTGTTTTGCGCTC
CTGGAGAGAGCTGCTCAAATACCGGATAATAAGCCACAGCTACAGAAGCT
CTATTTCTGGGCGTAATTCTATCGGCATTCTCAGCGATGTTCAATCAGCG
GCTCTTCATTCTGGCCCCCGGGAATCGCCTTAGTTGGTGTATTCGGGAGT
GCCCCTATGCACGGACAAAATCCTCAACAGCTTTTTGTCTCAGCTGCAAG
CTAATGCTAGTCTGAGAACGAAATCAGATTCTATTACAATGATTAAGCCA
GATTCTATATATAGGCTATATCT
FMO02891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mms19-RB | 3233 | CG12005-RB | 100..1253 | 40..1198 | 5175 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5232790..5233174 | 124..508 | 1925 | 100 | Plus |
| 3R | 32079331 | 3R | 5233384..5233734 | 508..859 | 1710 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5233796..5234116 | 862..1187 | 750 | 90.3 | Plus |
| 3R | 32079331 | 3R | 5232642..5232726 | 40..124 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:45 has no hits.
FMO02891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:18 Download gff for
FMO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 100..1256 | 40..1201 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:06 Download gff for
FMO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 100..1256 | 40..1201 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:06 Download gff for
FMO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5232642..5232726 | 40..124 | 100 | -> | Plus |
| 3R | 5232791..5233174 | 125..508 | 100 | -> | Plus |
| 3R | 5233385..5233731 | 509..856 | 99 | <- | Plus |
| 3R | 5233791..5234130 | 857..1201 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:18 Download gff for
FMO02891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1058364..1058448 | 40..124 | 100 | -> | Plus |
| arm_3R | 1058513..1058896 | 125..508 | 100 | -> | Plus |
| arm_3R | 1059107..1059453 | 509..856 | 99 | <- | Plus |
| arm_3R | 1059513..1059852 | 857..1201 | 91 | == | Plus |
