FMO02892.5prime Sequence
1254 bp (1021 high quality bases) assembled on 2008-06-10
> FMO02892.5prime
TTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGTCAAAATTGG
ACCAGGACCCGAACGCCTCACTGAGCATCATGGAGCAAATCAAGCAGCTC
ATCCGCCCGCCGCCCAACGAGGACGAGAAGATGATGCAGCGGTCCACCAA
CACGAAGCATCCGTACTACAGGCGCCCGGGCAGGGGCCACAACCACGACT
ATTGTGACGCCTGCGAGGAGGGCGGCAATCTGCTGTGCTGCGATCGATGC
CCCTCCAGCTTCCACCTGCAATGCCATGATCCACCGTTGAGCGAGGAGGA
CATACCCAGTGGCCAGTGGCTGTGCCACAGCTGTCGCATGAGCAAGCTCT
CCCAGCCGCCGGCCTCCTCATCCAAGGCCAGTTCCGTGGAGCGTGTGCCT
TCGGCGGGCAGTGGCTCACGGGCGAATACTCCATCGTCTGGCGATCTGGA
GTCCATACCGCTGAAGATCCGCAACCTGCGCAAACGCAGCAACAGCGAAC
GCAATAGCACCGAGAAGCTGCTGGCCAAAATGCCGATGTCCATACAGCGC
GCCCTCGATCCGAACAAGAAGCCAACGCCGCTGGACGATGTCATCAGGGC
GGCCACCATGATGAATCCGCAGCAATTCTCGCTGCCGCCGGAGCTCGAGC
TGCACACCCAGTTCCCGGGCAATGGCAAGGTGCAACCCGTACAGCAGACG
CATCCGCCGAGCGGAAAATGGCGGTAATCGCAGATGCGCCGGCAATCAGC
GACGCAACTCCAAGCCGTTTGAGCTGGATGCCCAGGGACTGGTGCCGCTG
CCCGCCAAAACCTGTTTCTACTGCACGCGCTCCTGCAAACGGGCGCCGCT
CATCTCCTGCGACTACTGTCCGCTCTACTTTCACAAGGATTGCCTGGATC
CGCCACTGACGGCACTGCCAGCTGGATTGTGGATGTGCCCCAATCATGCC
GAGAATTTTATCGATGCCAATATGACCAATAGCATTTCGGCCACGGAGCG
GGTGCGTTTCTGGAATCGCTTCAACAGCCACTTGACATGAAATTTCAAGC
TTGATTCTTCCGGCGTGTCAACCGCGCAATCGCCCTTTCGCCACCAAGAA
GAAATTCTGCTGCTCCCGCCCCATCGAGGTGCAGCCATTGTGGCGCTACC
ATTACGAATCATCCGCCGCCGCTGTTTGCTCAAGGCCAACGTTGGCCTTA
CGATCGTAAGGCGCCATTAACCGGTGCTCACGAAGTCTCTAGGGAGAGAG
ATCA
FMO02892.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 3232 | CG3815-RA | 118..1259 | 38..1176 | 5275 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6295964..6296649 | 277..963 | 3370 | 99.7 | Plus |
| X | 23542271 | X | 6295708..6295900 | 84..276 | 965 | 100 | Plus |
| X | 23542271 | X | 6296709..6296926 | 963..1176 | 365 | 88.2 | Plus |
| X | 23542271 | X | 6295506..6295553 | 38..85 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:05 has no hits.
FMO02892.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:38:04 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:49 Download gff for
FMO02892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..1261 | 38..1179 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:18 Download gff for
FMO02892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..1261 | 38..1179 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:18 Download gff for
FMO02892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6295506..6295553 | 38..85 | 100 | -> | Plus |
| X | 6295710..6295900 | 86..276 | 100 | -> | Plus |
| X | 6295964..6296648 | 277..962 | 99 | -> | Plus |
| X | 6296709..6296928 | 963..1179 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:49 Download gff for
FMO02892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6189539..6189586 | 38..85 | 100 | -> | Plus |
| arm_X | 6189743..6189933 | 86..276 | 100 | -> | Plus |
| arm_X | 6189997..6190681 | 277..962 | 99 | -> | Plus |
| arm_X | 6190742..6190961 | 963..1179 | 91 | | Plus |
