FMO02893.5prime Sequence
1238 bp (990 high quality bases) assembled on 2008-06-10
> FMO02893.5prime
CGTATAGCATACATTATACCAAGTTATCAGTCGACATGGGCAAAAAGAAC
AAGGGCGGCGCCCCCAACCTGGGCCGCCAGTTGATCAAGGATCGTTTCGG
ACACACTCAGCGCCGCAAGGTGGACAACGACACGATGCTGCACACCACCG
AGCTGCAGGATGGCTACGACTGGGGCCGCCTCAACCTGTCCTCTGTCACT
GAGGAGTCGTCGTTCCAGGCCTTCCTGCGCACGGCTGAGCTGGCCGGCAC
TGAGTTCCAGGCCGAGAAGCTGAACATCACGTTCGTGAACCCCAAGCAGC
GCGTTGGACTGCTGAGCAAGACGCAGGAGCAGCGCATGCACCAGAAGCAC
GACGAGCACCGTGACCAGCTCAAGATCCCGCGGCGGCCCAAGTGGACCAA
GGAGACGAGCGCCGAGGAGCTAGTGCGAGCCGAGAACGAGGCATTTCTCG
ACTGGCGCCGCGACCTGGCGCTGCTGCAGGAGGACGAGGAGATCTTGATG
ACTCCGTATGAGAAGAACCTGGAGTTCTGGCGGCAGCTGTGGCGCGTAGT
GGAGCGATCTGACGTCGTTGTGCAGATCGTAGACGCCCGTAATCCGCTGC
TGTTCCGCAGCGCCGACCTTGAGCGCTACGTAAAGGAGGTGGAACCTAGC
AAGATGAACATGATCCTGGTAAACAAGTCGGACCTGCTCACTGAGGAACA
GCGTCGCCACTGGGCGGAGTACTTTGACAGCGAGGGTATTCGCACGGCCT
TCTACTCGGCCACGCTGGTAGAGGAGGAGTTGAAGCGGGAGGCGGAGGAG
TGCCTGGATTCCTTTCCCGAGGTGCAACAGCTGCGCAGAGCAGTTGAGGA
GATAAACAGTCGTGGGATAGCGTGGAGGACGCTTTGACGTTATCGAGCAG
AAATATAAGACGATTCCCGAGACCCAAAACGATGAGCTGCCACGATTGCC
CGGGGACAAGAACAGTCCCCGACTGCTGTTCCCGCCTGGAGCCTCATTGG
AGTCCTGCGAACCTTCTTCACCGGTCCCCGGCACACAGAGCAGCACGTGG
ACCGTCGGAATGGTTCGGCTACCCAACGTTGGCAAGGTAGCACCATCACC
TCCCTGATGCTGAAAAAGGTGTTCCGTTTCGGGCCCACCGGCAAACTAAA
CCCTCCGATGCCTTTTTCTTACAGAACATCTGTCTTCGCATGTCCGGACT
GTGGTATGGCCAGATTTGGTGTTATACACTGGGGGACA
FMO02893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 105..1225 | 35..1151 | 5065 | 97.5 | Plus |
| Ns3-RA | 2040 | CG14788-RA | 105..1225 | 35..1151 | 5065 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1462968..1463940 | 1109..137 | 4320 | 98.1 | Minus |
| X | 23542271 | X | 1464014..1464116 | 137..35 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:56 has no hits.
FMO02893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-06-10 14:37:59 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:52 Download gff for
FMO02893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 94..1179 | 22..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:45 Download gff for
FMO02893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 94..1179 | 22..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:45 Download gff for
FMO02893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1462968..1463939 | 138..1109 | 98 | <- | Minus |
| X | 1464014..1464127 | 22..137 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:52 Download gff for
FMO02893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1358047..1358160 | 22..137 | 95 | | Minus |
| arm_X | 1357001..1357972 | 138..1109 | 98 | <- | Minus |
