FMO02904.5prime Sequence
1247 bp (945 high quality bases) assembled on 2008-07-02
> FMO02904.5prime
ATAGCACACCTTATACCAAGTTATCAGTCGACATGGAGAGCTTGCAGGTG
AACACGACCAGCGGACCGGTGCTCGGAAAACAATGTACAGGTGTCTACGG
CGATGAGTACTTCAGCTTCGAGCGGATTCCGTACGCGCAGCCGCCGGTGG
GGCACCTCCGGTTCATGGCCCCCCTGCCCGTGGAGCCCTGGAGCCAGCCC
TTGGATTGCACCAAGCCCGGCCAGAAGCCACTCCAATTCAACCACTACTC
CAAACAGCTGGAGGGCGTCGAGGATTGCCTGTATCTGGATGTCTACGCCA
AGGAGCTGGACTCACCAAGGCCACTACCGCTGATTGTGTTCTTTTTTGGC
GGTGGTTTCGAAAAGGGCGACCCCACCAAGGAGCTGCATAGTCCTGACTA
CTTCATGATGCGCGATGTGGTCGTAGTCACAGTTTCCTATCGCGTGGGTC
CCCTTGGATTCCTAAGCCTGAACGATCCTGCCGTGGGAGTGCCCGGAAAT
GCTGGTCTGAAGGATCAGCTGCTGGCAATGGAATGGATCAAGGAAAACGC
AGAACGATTTAATGGCGATCCCAAGAACGTGACCGCTTTTGGCGAAAGCG
CCGGAGCCGCATCAGTCCACTACTTGATGCTGAATCCCAAGGCTGAGGGT
CTGTTCCACAAGGCCATACTGCAATCGGGCAATGTACTCTGCTCCTGGGC
CCTCTGTACCATCAAGAATCTACCGCATCGGTTAGCTGTCAACCTGGGAA
TGGAAAGTGCCGAGCACGTGACCGACGCCATGGTCTTGGACTTCCTGCAA
AATTGCCGAGAGAGAAACTGGTTCGACCATATCTACTTAGCGCAAGAGGA
GCACCTGGACGATTGCGTCTTTCAGTTTGGGCCTAATGGTGGAGCCATAT
AAAACGGAGCACTGCGCGCTGCCCAATCATCCGCAGAAACTGCTGGACAA
GGTCTGGGAAATAGGATTCCGGTACTGATGAGCGCTCCTTCCTTCAAGGG
CTTGCTTGAATGTACCCCCCGCGTCCAAATGGCTCCGTAACTTGCCTGAC
CAGCCTGAAAAAAGAACTCAGATCACTTCTTGCCCACTGAATGTGAATGC
TAATCTTGCCCCAGGCTCTAGCTTCGACACTTCTGGACCAGCGAATCCGG
GAACCACCTGTGGCGGTTAATGATCTTTCTGCCATGTCCCGAATTCCTTA
ACGCGATCTGTGAGTAGCCCCACGCTATAGAGATTGTTGTGTCATAC
FMO02904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est3-RD | 1726 | CG1257-RD | 22..1198 | 31..1216 | 4995 | 95.7 | Plus |
| alpha-Est3-RB | 1834 | CG1257-RB | 130..1306 | 31..1216 | 4995 | 95.7 | Plus |
| alpha-Est3-RA | 1825 | CG1257-RA | 121..1297 | 31..1216 | 4995 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7539591..7540464 | 1188..304 | 3270 | 95.2 | Minus |
| 3R | 32079331 | 3R | 7540868..7541134 | 305..39 | 1305 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:10 has no hits.
FMO02904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:59 Download gff for
FMO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 106..1277 | 21..1201 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:59 Download gff for
FMO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 110..1281 | 21..1201 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:10 Download gff for
FMO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 110..1281 | 21..1201 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:10 Download gff for
FMO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7539577..7540462 | 306..1201 | 95 | <- | Minus |
| 3R | 7540868..7541134 | 39..305 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:59 Download gff for
FMO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3365299..3366184 | 306..1201 | 95 | <- | Minus |
| arm_3R | 3366590..3366856 | 39..305 | 99 | | Minus |
