FMO02907.5prime Sequence
1251 bp (975 high quality bases) assembled on 2008-07-02
> FMO02907.5prime
TTCGTATAGCATACATTATACCAAGTTATCAGTCGACATGTTTAGGATCC
ACCTCAAGATGGGTCCCCAACGCAACCAGCTCCACAGCAACAACAACAAT
GGTGCCGCCGGAAGTATCAGCAGCACCGGAAACCGTCACCTGAAGGAGTT
CACCTGCTGCTTCGGCCTGCATGTCCACACGGCCACTTTGATGATCGGAT
TGTGGCACCTGTTCTTGAACATATTGGCGCTAAGCGTTCTAGCGGTCATA
TGGCGCAATCCGGAGATGATGGACGAACTGGAAGGTGGCACCCACGACTA
CACCGTGGATCTGAGTGCACCGGCCCTACCCACGCCCCTTAGCAAGGTCG
AACCGCCCTACGCCTACCGTGACCACTCCCTCAACTATCAGAACTTCGAT
ATGGGCGGACTGGTGTGCACCTGCATGATAGCCATTACACTGATGATGAT
CTACGGAACCATCAAGGGAAAACCCTCCCACCTGTTGCCGTTCTTCTGTT
TGCAATTGTTTGATTTCGCTATTACAACTCTCACCGCCGCTGGATATCTG
TGCTACCTGCAGGCCATTCACAGCATCATTGCCGAGTCGCATCGCTTGCC
GTGGCGCGAGAAGCTGCTAGAACTACCACCTGAGGAGCTAGTTGTTGTTG
TCCTGGTCGTATTCATCTGCATTGTGTTTCTAAAGGCCTATTGCATTGGT
ATCGTTTGGCGCTGCTACAAGTACTTGACGCTCCGTCAGCAACACGTTCG
CACCCTGTTCCCCTTCCTGGAGCCACCGACTGGAGTCCACAGTGTTGGCG
GAACCTTTGGTGCCGAAGAGCGGTCTTACTCCACTCTGTTGCCCAATTAC
GATGAAAGCGATTGCCCAGTACTTGAAGCAGGCACCACCGCCCATCTTAT
CAGGTGCCCATGTCAAACTACGAAGAGGGGTGAAGACGCAGCTGTTGGAG
GTGCGGAGGTTTATCCTTCGTGGCCCTCTCTTCGTGGCCCTTGGAGCAGC
CACTACCGCGACGTAGCTTCCACACGGATGACACATGGATAATAACATGA
TCAGCGAACCATAACAACCATTATGCATTGTCAATGCCAATTACGCCACC
ATGCCCCGCACCGATTGCAACTGTTAACGCCTAATGTCACCAAGATCGAC
AAATTTGGGAGTTATTGGACCCTGGCTGATAGTATCGTGAATTTCGTTTT
CGCCTTAACAGACCGTAGTGCCGAAGATGCCCACGAAGAGCATAAAGTGA
C
FMO02907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RA | 2120 | CG14767-RA | 157..1257 | 38..1138 | 4995 | 97.7 | Plus |
| CG14767-RB | 2043 | CG14767-RB | 68..1180 | 38..1138 | 4865 | 96.6 | Plus |
| CG14767-RC | 2132 | CG14767-RC | 157..1269 | 38..1138 | 4865 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8718969..8719489 | 1047..529 | 2180 | 97.5 | Minus |
| 2R | 25286936 | 2R | 8719855..8720033 | 389..211 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 8723257..8723430 | 211..38 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 8719646..8719784 | 528..390 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2388 | 65..139 | 127 | 65.3 | Plus |
FMO02907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:56 Download gff for
FMO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 155..1263 | 38..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:24 Download gff for
FMO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 157..1265 | 38..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:18 Download gff for
FMO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 157..1265 | 38..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:18 Download gff for
FMO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8719855..8720032 | 212..389 | 100 | <- | Minus |
| 2R | 8723257..8723430 | 38..211 | 99 | | Minus |
| 2R | 8718872..8719489 | 529..1145 | 95 | <- | Minus |
| 2R | 8719646..8719784 | 390..528 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:24 Download gff for
FMO02907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4606377..4606994 | 529..1145 | 95 | <- | Minus |
| arm_2R | 4607151..4607289 | 390..528 | 100 | <- | Minus |
| arm_2R | 4607360..4607537 | 212..389 | 100 | <- | Minus |
| arm_2R | 4610762..4610935 | 38..211 | 99 | | Minus |
