FMO02909.5prime Sequence
861 bp (734 high quality bases) assembled on 2008-07-02
> FMO02909.5prime
TATACCAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTA
CCCCAACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGT
ACATGGTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGA
GTGCCCGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGA
GCCCAAGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCT
TCATCATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCG
GAGTACGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAAC
TCGTGGTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCA
AGGTGGACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTG
ACGAAGGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCAT
CAGTGATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCA
CTCGCCTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAAC
CTGTCCGAACTGCTAACCGAGCGCGAAACCCCTGGCCCCACAATATGCAG
CAACGTTGGACGAGGCCACCGAGCCGTGTGGCGTCATGGTGGACCGCGTT
GAGATCAAGGATGTCTCCCTGCCCGTTTTCCATGCAGCGTGCCATGGCCG
CCGAAGCGGAAGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAG
GGTGAGAAAAATCCGCCACAGCGCTCAAGGGAGCATCCGATGTCATTTCC
GCCAGTCCATC
FMO02909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mec2-RA | 1238 | CG7635-RA | 81..919 | 22..861 | 3890 | 97.9 | Plus |
| CG33253-RB | 1733 | CG33253-RB | 392..923 | 277..807 | 755 | 77 | Plus |
| CG33253-RC | 2410 | CG33253-RC | 1069..1600 | 277..807 | 755 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19189034..19189547 | 191..705 | 2345 | 97.9 | Plus |
| X | 23542271 | X | 19188115..19188283 | 22..190 | 800 | 98.2 | Plus |
| X | 23542271 | X | 19189640..19189795 | 706..861 | 625 | 96.2 | Plus |
| X | 23542271 | X | 19185776..19186132 | 277..630 | 535 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:36 has no hits.
FMO02909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:57 Download gff for
FMO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mec2-RA | 76..919 | 14..861 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:34 Download gff for
FMO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mec2-RA | 76..919 | 14..861 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:25 Download gff for
FMO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mec2-RA | 76..919 | 14..861 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:25 Download gff for
FMO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19188110..19188283 | 14..190 | 96 | -> | Plus |
| X | 19189034..19189547 | 191..705 | 98 | -> | Plus |
| X | 19189640..19189795 | 706..861 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:34 Download gff for
FMO02909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19082143..19082316 | 14..190 | 96 | -> | Plus |
| arm_X | 19083067..19083580 | 191..705 | 98 | -> | Plus |
| arm_X | 19083673..19083828 | 706..861 | 96 | | Plus |
