FMO02910.5prime Sequence
1251 bp (969 high quality bases) assembled on 2008-07-02
> FMO02910.5prime
TTCGTATAGCATCCATTATACCAAGTTATCAGTCGACATGCCCGTGAAAA
CAGTGAATCGCCAGCAGAGCCAAACGCCCGCCCAACAACTGCAATTGCAG
CAGCAGCGGGACGTCTAGAATGGGCTCTATCCCACGATTCCGGCCGAGCG
ACGATCGCCCCCCTCGCGTCCGCAAACGCTGCGACAGGACACCATCGATA
TGGAGGAAATACCGCTCAATCAGACGAACAGCCAGGAGCCAGAGGATCGG
CGCAAAATGCACGAGATATTTGACAAGCACGACTCTGACAGAGATGGGCT
GATCAACACGCACGAGCTGAAGGAACTGATCTCGGATGGCTATTGCCGGG
ACATTCCCGCCTACATCGCCGACCAGATCCTGAAGCGCAGCGATCAGGAT
AACGACGGCCACCTGGACTTCGAGGAATTCTATGCGATGTCCCTGCGCCA
CAAGTGGATGGTGCGCAACATGCTGACCCGCTACTGTCGCTACGTTGTGC
CGCCACCGAAGCCCTTAGAGGGCGATGAGCCCGACGGTGCCTACGAGAAG
CAAATGTCCATCTGCCCGCCGCCGCTCACCATGGTGCTCTTCTCGATTAT
CGAGATAATCATGTTCCTCGTGGACGTCATACATTTCCAGGACGATCCCA
ACTACCAGGATCGCATAGGCGAGAGCACAAGTGGACCAGCGGCCACCCTG
TTCATCTACAATCCGTACAAGCGCTATGAGGGATGGCGCTTTGTTAGCTA
CATGTTCGTTCACGTGGGCATCATGCATCTGATGATGAACCTGATTATCC
AGATCTTTCTGGGCATCGCCCTGGAACTGGTGCATCACTGGTGGCGCGTG
GTCTGGTCTACCTGGCTGGCGTGTTAGCCGGTTCCATGGGCACCTCGCTA
ACCAATCCTCGCATCTTTCTAGCGGGGCGCATCGGGTGGAGTATACGCAC
TGATCACGCCCACATTGCCCACAATAATTATGAACCTACTCGGAAATGGA
GTACGCCATTGTCCAAGCTGCTGCCTTTTCTGGTTTCTGCTTCCACCGAC
TTGGTGTACCTCGTGTACCCGCCACCTTGACCGACCAGCAACGAATCAGA
ATTGGCTTAGTTGACGCATTTGCTCGGGTGCCCGTTCCCCGGCTTGCTGA
GTGGAATCGGTGTCGTGCCAATTGGAAGGTGCGCCATGAACCATTCCTGT
GGACCGCGCTCATCGATATCACTTTGCCCCCTCTGATAGCAACAGCTGCA
C
FMO02910.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-4-RB | 2345 | CG1697-RB | 250..1385 | 38..1183 | 4955 | 96.6 | Plus |
| rho-4-RA | 2057 | CG1697-RA | 250..1385 | 38..1183 | 4955 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11604310..11604674 | 276..640 | 1825 | 100 | Plus |
| X | 23542271 | X | 11604736..11605066 | 640..969 | 1480 | 98.5 | Plus |
| X | 23542271 | X | 11600087..11600326 | 38..277 | 1185 | 99.6 | Plus |
| X | 23542271 | X | 11589621..11589726 | 38..143 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11591714..11591819 | 38..143 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11595900..11596005 | 38..143 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11587528..11587633 | 38..143 | 425 | 93.4 | Plus |
| X | 23542271 | X | 11593807..11593912 | 38..143 | 425 | 93.4 | Plus |
| X | 23542271 | X | 11597993..11598098 | 38..143 | 425 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:19 has no hits.
FMO02910.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:28 Download gff for
FMO02910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 247..1340 | 38..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:04 Download gff for
FMO02910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1343 | 38..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:17 Download gff for
FMO02910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1343 | 38..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:17 Download gff for
FMO02910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11600087..11600326 | 38..277 | 99 | -> | Plus |
| X | 11604312..11604673 | 278..639 | 100 | -> | Plus |
| X | 11604736..11605078 | 640..982 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:04 Download gff for
FMO02910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11494120..11494359 | 38..277 | 99 | -> | Plus |
| arm_X | 11498345..11498706 | 278..639 | 100 | -> | Plus |
| arm_X | 11498769..11499111 | 640..982 | 97 | -> | Plus |
