FMO02913.5prime Sequence
1270 bp (942 high quality bases) assembled on 2008-07-02
> FMO02913.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGTGTGTGAATCG
AGAAACGCAGAGCAGCAGCAACAATAATAGCAACAACACTACAACGGCAA
CGTCAACAGCACGCAACAACAACAGCCACAACGGACGCTGTGAGTGCGAC
GGAGACGGCGACAGCGTGAGTCATATACAAAGTGAAATGAAAATGCGGAT
AAAGCGAGAAGCGCCGTGTCTTCTGTTATTTATGCCAATCCAAAATACCA
ACAACAACAATCGCATTGGTGCCAATCAGAAGGACTATCCCAACAAGCGG
TCCAGGGAGAATCTGGCATGTGACGAAGTGACATCGACGACGTCTTCATC
CACGGCAATGAACGGCGGCGGACGGACGCCGGCGCTAACCCGCAGCTGCT
CCAGTCCGGCGGTCTACGATATAGAAACACACCCCGCCTCGCCCGTTTTC
CCGCATCTATTGCTGGGCAATGGACGCGACGCCGACGATCCCAGCAGCGT
GGGCGCCAACTGTGTGCTGAACGTTACCTGCCAAAGTCCCAATGAGAGCC
ATCTGCAGGGCCTCAAGTACATGCAAATACCTGCCAGCGATACGCCACAT
CAGAACATCAAGCAGTACTTCCAGGAGGCCTACGACTTTATCGAAGATGC
ACGGAAAACGGGTTCCCGAGTGCTGCTGCACTGCCACGCGGGGATTTCGC
GGAGCGCCACCATTGCCATCGCCTACGTCATGCGGTACAAGTCGCTCTCC
CTGCTGGAGACCTACAAGCTGGTGAAAGTGGCCCGGCCGATCATCTCGCC
CAATCTGAACTTCATGGGCCAGCTGCTGGAGCTGGAGCAGAATTTGCGCA
AGAGCGGAGTCCTGGCGCCCGCAACCCCGCACCTGAATAGTCCTAGCCAA
TCCTTCGTCATCTTTCTGTGGGGATTAAGCACCCGATCTAGTCAGCTGGT
GGAGCAGCCAGAAGGAGGAGGAGAAGCGGGACCAGCGGGGAACGGGTAAA
TCCAAGTCTGATAGCGAGGCTAATGGACGAGGATGGGTTTGATTACTATG
ATGGTGACAAGCGGCTTCGGCTGCCTGGCGGGTAGTACTGCTCATCAGAA
TGACCTTCGCCGGCAATAACCCGGAAGACGAGGCGCTCATCACTTCGGGC
GGGCAGCGTCGTCGGTTTCAGAAACTAGAATTCACCAGCCTAAGACGAAT
GGAGGGACTCGGCTCCCAGGTCTGAGTCACCAGGCTTATATCGGTATATC
ACCCCGGCGACGAATCATCC
FMO02913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| puc-RA | 2919 | CG7850-RA | 530..1671 | 37..1186 | 5100 | 97.1 | Plus |
| puc-RB | 2407 | CG7850-RB | 252..1159 | 271..1186 | 3930 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8120511..8121035 | 643..1173 | 1810 | 93.2 | Plus |
| 3R | 32079331 | 3R | 8105861..8106095 | 37..271 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 8111076..8111301 | 418..643 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 8108231..8108378 | 271..418 | 710 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:33 has no hits.
FMO02913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:48 Download gff for
FMO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 527..1672 | 37..1189 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:07 Download gff for
FMO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 530..1675 | 37..1189 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:25 Download gff for
FMO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 530..1675 | 37..1189 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:25 Download gff for
FMO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8105855..8106095 | 31..271 | 98 | -> | Plus |
| 3R | 8108232..8108378 | 272..418 | 98 | -> | Plus |
| 3R | 8111077..8111301 | 419..643 | 100 | -> | Plus |
| 3R | 8120512..8121035 | 644..1173 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:07 Download gff for
FMO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3931577..3931817 | 31..271 | 98 | -> | Plus |
| arm_3R | 3933954..3934100 | 272..418 | 98 | -> | Plus |
| arm_3R | 3936799..3937023 | 419..643 | 100 | -> | Plus |
| arm_3R | 3946234..3946757 | 644..1173 | 94 | == | Plus |
