FMO02914.5prime Sequence
963 bp (963 high quality bases) assembled on 2008-07-02
> FMO02914.5prime
CGTATAGCATACCTTATACCAAGTTATCAGTCGACATGAAGTGGGAGAAC
TACTGCGACTTTGTGGCCGGATGCTTTGGCGGTGCCTGCGGGGTGCTAGT
GGCCCACCCACTCGACACGATCAAAGTTTGGCAACAGGCCTCAAATTCAT
CCGTTGTGACAGCCATTCAACAGATCTACAGCAGAAATAATGGGGTCAAC
GGCTTCTACAGGGGCATGTTCTTCCCGTTCATCTCGACGGGAGCGATCAA
CTCGCTGCTTTTCGGCATCTATGGAAACCATCTGAGGCAGCTGAGAAAGG
TGTGCCACAGTGACTACCAGCGGGAGCAGCTGGAGTACCACAACATGTTC
CTGGCGGGCTCTGTGGCGGGATTCGTGCAGTCCTTCATCGCCTGTCCCAT
GGAGCTGATCAAGGTTCGCCTGCAAACAGCCACTTATTACAGTGACTATC
TCTATGGCCAGAGAAGGACCGCCTTTGGCACGTTCAAAAGGATACTCAAG
ACTGATGGCATCTCGGGGCTCTATCGCGGCCTTTTGCCCATGATGTGCCG
CGACGTCCTGCCCTATGGAATCTATATGCTGGCCTATCGCCAGGGCGTTG
ACTACATGGACAGGCGGGACTTTGTGCGCCGGCGACGCAGTCAGTCGGAC
GGATCCAGTGTGAACCTGCTGGTGACCACGCTGGCCGGCGCCTGGGCGGG
AGTCATCTCGTGGGTGTGTGTCATTCCGTTCGACGTGGTCAAGACGCTGA
TGCAAGCGGACGAGAATCACAAGTACCGGGGCATCTTCCATTGCGTGCGG
GTGCAGTACAGAGCCTACAGCTGGAGGAGCATCTTCCCGCGGCAGCTGGA
TGCTGGTGGCGCGGGCGGTTCCCTTCAATGCCGCCACTTTCCTGGGCTAC
GAGTATGCGCTGGGAGTGGTGTCAGCGGTGGAACGCACCTACGTAGCAAG
CTTTCTAGACCAT
FMO02914.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5646-RA | 1273 | CG5646-RA | 99..1008 | 35..945 | 4365 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27559644..27560038 | 945..550 | 1790 | 98.5 | Minus |
| 3R | 32079331 | 3R | 27560274..27560515 | 435..194 | 1180 | 99.2 | Minus |
| 3R | 32079331 | 3R | 27560761..27560876 | 196..81 | 565 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27560100..27560214 | 550..436 | 560 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27561172..27561221 | 84..35 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:19 has no hits.
FMO02914.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:01 Download gff for
FMO02914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 76..989 | 28..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:44 Download gff for
FMO02914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 95..1008 | 28..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:37 Download gff for
FMO02914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 95..1008 | 28..945 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:37 Download gff for
FMO02914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27561175..27561225 | 28..81 | 92 | | Minus |
| 3R | 27560274..27560514 | 195..435 | 99 | <- | Minus |
| 3R | 27559644..27560037 | 551..945 | 98 | <- | Minus |
| 3R | 27560100..27560214 | 436..550 | 99 | <- | Minus |
| 3R | 27560763..27560875 | 82..194 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:44 Download gff for
FMO02914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23385366..23385759 | 551..945 | 98 | <- | Minus |
| arm_3R | 23385822..23385936 | 436..550 | 99 | <- | Minus |
| arm_3R | 23385996..23386236 | 195..435 | 99 | <- | Minus |
| arm_3R | 23386485..23386597 | 82..194 | 99 | <- | Minus |
| arm_3R | 23386897..23386947 | 28..81 | 92 | | Minus |
