FMO02916.5prime Sequence
1233 bp (1037 high quality bases) assembled on 2008-07-02
> FMO02916.5prime
TATACGAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGA
CGATGGGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCG
GAGATGTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTA
GCATTTTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTT
TTCGACAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTC
GCCTGGGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATAC
AAAGCCTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGG
CCTCATGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGA
CACCGCCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAAT
GACATGAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCC
CATCCTGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGT
GGGGTGGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGG
GCCTCGCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACC
CCGATATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCA
CCACGGTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCAC
CTCGAAGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGT
CTTGGTGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTA
TTGACTTGGTTTGGCCGCACAACTTCTCCACTGTGCTGGAAGTATACTAC
GGCACCGCCATACGATCGCCATGTGATTCTGGAAGAGTCCAGTGGATGTG
CGTTATCGAAAGCCGCGCACAGTCGCAGCTTAAAGGATCCACCTGGAACT
GGGCTCCCCGCATCTGCGCGCCTCAGCTTCAAGGCACGTGACTTGCAACC
TACACGCACCGCCGTTCCGCGAATAGTTCAGACCGGAATGGTCAGCAACC
GGTAGGAAGTTGAAAAAAAGGGCCTTCAGTCGAAATGCACCAAAAATCTT
GGAAAATTCCCGTCCGAGGTCGAACCAAGCCAAACACACGCAATTCGCAT
TCTCACCGGACATCTACGAGCTTACTCGTAGTG
FMO02916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mol-RF | 2073 | CG4482-RF | 79..1225 | 21..1172 | 4985 | 96.5 | Plus |
| mol-RD | 3012 | CG4482-RD | 1018..2164 | 21..1172 | 4985 | 96.5 | Plus |
| mol-RC | 2455 | CG4482-RC | 461..1607 | 21..1172 | 4985 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14977214..14977647 | 812..379 | 2170 | 100 | Minus |
| 2L | 23513712 | 2L | 14992307..14992472 | 186..21 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 14976845..14977085 | 1051..810 | 820 | 93.9 | Minus |
| 2L | 23513712 | 2L | 14983950..14984084 | 379..245 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 14984196..14984256 | 244..184 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:07 has no hits.
FMO02916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:50 Download gff for
FMO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mol-RA | 206..1257 | 14..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:04 Download gff for
FMO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mol-RC | 454..1505 | 14..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:18 Download gff for
FMO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mol-RC | 454..1505 | 14..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:18 Download gff for
FMO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14983950..14984084 | 245..379 | 100 | <- | Minus |
| 2L | 14984196..14984253 | 187..244 | 100 | <- | Minus |
| 2L | 14992307..14992475 | 14..186 | 97 | | Minus |
| 2L | 14977215..14977646 | 380..811 | 100 | <- | Minus |
| 2L | 14976845..14977083 | 812..1051 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:04 Download gff for
FMO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14992307..14992475 | 14..186 | 97 | | Minus |
| arm_2L | 14976845..14977083 | 812..1051 | 95 | <- | Minus |
| arm_2L | 14977215..14977646 | 380..811 | 100 | <- | Minus |
| arm_2L | 14983950..14984084 | 245..379 | 100 | <- | Minus |
| arm_2L | 14984196..14984253 | 187..244 | 100 | <- | Minus |
