FMO02917.5prime Sequence
1239 bp (1050 high quality bases) assembled on 2008-07-02
> FMO02917.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCACAGTCAGAG
GGCGGCTATGTATCGCTGCCGGCCGTCAATGGCAATGGCGGCGCCATCTA
TCAGTCGACCACAGAGCCCACGGCCCCGCCCTCCGTTTTTGCGAGCGTGA
AGCGGGCCATTGGCCAGGCCATCAAGTCCTCGCCCACCGACAGCGAGGAG
CTGCTCCGGTCGGACCGCCTGCCGGTCATCGTCGGCGGCTCCAGAGACCG
CGACAAATCCGGTAAGACACTGACCACCAAGATGCCGTCAGCTCCAACAC
ACACTGCCGAGGAGGCACATCTGCTGGGCACCATGCCCGTTGATCCCATG
GATGACATCGAACTGCGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGG
CTCCATCCTGGAGGCCTGCGAACAGCGACGCGTGCCCACAGACAAGGGCG
ATGTCCACGTGGCCATACAGGGCGATACGGCCAAGCCGGCCATTATCACC
TACCACGATTTGGGCCTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAA
TTTTCCAGTGATGCGAGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGA
CTGCTCCTGGCCAGGAGGAGGGTGCACCCACTTTGCCAGAGGATTACGTC
TATCCGACCATGGATGATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCA
CTTTGGCCTAAAGTCGGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATA
TTCTGGCCCGTTTCGCTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGC
CTGATCAATTGCGTGTCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCA
GAGCTTCAATGCCCGCTTCTTGCGCACCAAGGGCATGACACAGGGCGTGA
TCGATATCTGATGTGGCACCACTTCGGACGCAATCCGGAGGAGCGCAATC
ACGACCTGTGCAGATGTACAGCAGCACCTTCGAGCGTGCGTTAATCCGAC
CAATCTGGCATGCTGATCAACGCGTACATCCATCGTACGACCTGCATCTG
GCACCTCACTCGGCAGTACTCCGGGCCAGCGAACCGGCGGCACCACGCTG
AAGATGCCAGGTGATCATATCCCACGGTCCCCCTCGCCCGCACGTCAACG
AACCGGGAACCTTCAATGCGCCGAATCCTCACACCTTACTCTGGAAGAAG
ATTCCAATTGCGCCATTTGGGTACCGGGAGAAGGACCGT
FMO02917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RC | 2193 | CG15669-RC | 602..1740 | 35..1168 | 5135 | 97.5 | Plus |
| MESK2-RE | 2619 | CG15669-RE | 575..1713 | 35..1168 | 5135 | 97.5 | Plus |
| MESK2-RF | 2425 | CG15669-RF | 381..1519 | 35..1168 | 5135 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511933 | 644..1168 | 1735 | 94 | Plus |
| 2R | 25286936 | 2R | 21507513..21507722 | 35..244 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 21510866..21511060 | 328..522 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 523..643 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 21510115..21510201 | 242..328 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:31 has no hits.
FMO02917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:03 Download gff for
FMO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1479 | 35..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:46 Download gff for
FMO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1479 | 35..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:44 Download gff for
FMO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1479 | 35..1128 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:44 Download gff for
FMO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21507513..21507722 | 35..244 | 100 | -> | Plus |
| 2R | 21510118..21510201 | 245..328 | 100 | -> | Plus |
| 2R | 21510867..21511060 | 329..522 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 523..643 | 100 | -> | Plus |
| 2R | 21511404..21511874 | 644..1108 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:46 Download gff for
FMO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17395018..17395227 | 35..244 | 100 | -> | Plus |
| arm_2R | 17397623..17397706 | 245..328 | 100 | -> | Plus |
| arm_2R | 17398372..17398565 | 329..522 | 100 | -> | Plus |
| arm_2R | 17398628..17398748 | 523..643 | 100 | -> | Plus |
| arm_2R | 17398909..17399379 | 644..1108 | 96 | == | Plus |
