FMO02920.5prime Sequence
1215 bp (1053 high quality bases) assembled on 2008-07-02
> FMO02920.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGACCACATATCAAA
TGAACTTCAACCAGGACTTTACTTCCCTGTCCGTGCTGAGCCCCACGGGT
CTACGCCTGTTCTCGATTTCTAGCCAGGACAAGGTGGAGGAGATATTCGC
CAAGGACAACACGGAGCAAATCCGAATCGTGGAGCGCCTGTTCAACAGCT
CACTAGTAGTGCTGGTCACCGCCCAGAAGCCCAACTGCCTCAAGATGCTG
CACTTTAAGAAGAAGCAGGACATCTGTAACTGCTTTTACCCGTCGGAGAT
CCTGTGCGTCCGCATGAACCGCCAACGCCTGATCGTCTGCCTGGCGGAGA
GCATACACATCCACGACATCCGCGACATGAAGATCCTGCACTCCATCGAG
AACATCGCTCCCAACGAGCAGGGTCTATGCGCCCTCTCCCTCAACTCGCA
CCTGGCCTTCCCAGTCTGCCAAACGAGCGGCGAGCTGCGCATCTTTAACG
CCAGCAAGCTGCGCACGGGCATGACCATCAGGGCCCACGACACGTCCCTC
TCAGCTCTCGCTTTCTCGCCCAGCGGAGCTCTGCTGGCCACCGCCTCCGA
GCGCGGGACCGTCATCCGGGTCTTTTGTGTAAAAAATGGCCAGCGGGTGC
AGGAATTCCGGAGGGGCGTCAGCTGTGTCCGCATTGCCTCACTGGTCTTC
TCGGCCAGTGGAGACTTCCTCTGCGCCTCCTCCAACACGGAGACCGTCCA
CGTTTTCAAGATCGATACGCGGGCAGTGGAGACGGTTGAGCTGAAAGCGA
TAGCCGATGTAGCTGCCAAGTCCGAAAATTCTGCCAAGGAAGCAGTGGCA
TCCACAGCAGCAGAGGAGAGCTGTAGACCTGTCGCTTCCTGGGGCGGAAT
GTTTTCCAAGGCTGTGTCATCTTTGCTGCTGCCCACGCAAGTCAGCGAAG
TTATTAGCTCAGACCGATCCTTTGCTACGGTGCAGCTGGCTCAGGCGGCC
TAAAGCACATCTGTGCCCTGACCCGTGTTCAGAAGGAGCCACGTCTGCTG
ATTGCATGCGAGACGATTCTGTACTGCACGAGTTTCTGCGAACGGGTGGT
CCTGTAACTGATGTCTGTCACCGACTGCCGGGCCTTGGAGGATGTATAGC
TTGACCTGAACGACCTTCAAGGTCGAACATAAGCCTTCGAATTCGCGTCA
CTGTGGTACACACTC
FMO02920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg18b-RB | 2435 | CG8678-RB | 276..1454 | 35..1192 | 5205 | 97.2 | Plus |
| Atg18b-RA | 2064 | CG8678-RA | 276..1454 | 35..1192 | 5205 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21213917..21214647 | 803..73 | 3655 | 100 | Minus |
| 2L | 23513712 | 2L | 21213509..21213771 | 1062..801 | 1155 | 98.5 | Minus |
| 2L | 23513712 | 2L | 21220260..21220297 | 72..35 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:30 has no hits.
FMO02920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:05 Download gff for
FMO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8678-RA | 266..1383 | 27..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:53 Download gff for
FMO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8678-RA | 271..1388 | 27..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:27 Download gff for
FMO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18b-RA | 271..1388 | 27..1134 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:27 Download gff for
FMO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21213425..21213768 | 804..1134 | 94 | <- | Minus |
| 2L | 21213917..21214647 | 73..803 | 100 | <- | Minus |
| 2L | 21220260..21220302 | 27..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:53 Download gff for
FMO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21213425..21213768 | 804..1134 | 94 | <- | Minus |
| arm_2L | 21213917..21214647 | 73..803 | 100 | <- | Minus |
| arm_2L | 21220260..21220302 | 27..72 | 93 | | Minus |
