FMO02923.5prime Sequence
1128 bp (959 high quality bases) assembled on 2008-07-02
> FMO02923.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTACGAGGGAG
GCCTGCGGCCAGTTTGCTGCTGCCAGTGCGGCAATGGCGGCTGCTTCCAG
TCAAAATCCGTCGAAGGCCACGATGACGGACCCCCGTTTTCGGATCCGAC
CCCTGCAGCAAGTGGCATCCGCCTGTACCGGCGCCATGGTGACGGCCTGC
TTTATGACCCCTCTGGATGTGATCAAGACCCGCTTGCAGGCACAGCAGCA
GGCGCTGCTCTCAAACAAGTGTTTCCTCTACTGCAACGGCCTCATGGACC
ACATCTGCCCCTGCGGCCCGGACACGCCCAACCCAGCAGCCGCCAAGCCC
GCTCCCCGTTTTTCTGGCACCATTGACGCATTCATCAAAATCAGCCGCAC
TGAGGGCATCGGCTCCCTGTGGTCGGGGCTCAGCCCAACGCTAATCTCGG
CCCTGCCCTCGACCATCATATACTTCGTGGCTTATGAGCAGTTCAAGGCC
CGTTTCACCGATATCCACTACAAATACACGCGACGCCCGGATACCATTGC
CCACGACATTCCACACCCGATTCCATTTCTGGTGCCGCTGCTGGCCGGCG
TGTCGGGCCGCATTCTGGCCGTAACCTGTGTAAGTCCCGTCGAGCTAATC
CGCACCAAGATGCAATCGCAGCGCATGACGCACGCCGAGATGTTTGGCAC
CATTCGCCAAGTGGTGCAGTCGCAGGGCGTGCTGGGCTTGTGGCGCGGTC
TGCCGCCACCATCCTGCGCGACGTGCCCTTCTCCGGCATCTACTGGACCT
GCTACGAGTACCTCAAGAGCTCCTTTGGCGTTGTGGAGCCAACGTTTAGC
TTCAGCTTTTGCGGCGGGAGCGATATCCGGATCGGTGGCCGCCACCATCA
CCACGCCCTTCGATGTGTGAAACCGCACGAGCAGATCGATCCGGCGAGAG
TCATAATCTCAGATATCCACCCAAGCAGGTGGCCACCAGTCGTGCCGATG
CCCTGGCCAGCATTTACCGCCATGGGCGGTGGGGCCCGCCATTTCTCTGG
ACTTGGGCCCCGACTCTTCAGGGAACGCCCGCATGGTGCAATATGATTCC
GTCTCTACGAGATCGGAGGTCATCCTCA
FMO02923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shawn-RE | 3255 | CG14209-RE | 1890..2966 | 35..1103 | 4840 | 97.5 | Plus |
| Shawn-RD | 1618 | CG14209-RD | 253..1329 | 35..1103 | 4840 | 97.5 | Plus |
| Shawn-RC | 3032 | CG14209-RC | 1688..2764 | 35..1103 | 4840 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19614442..19614953 | 375..886 | 2465 | 99.6 | Plus |
| X | 23542271 | X | 19614213..19614383 | 205..375 | 855 | 100 | Plus |
| X | 23542271 | X | 19613974..19614143 | 35..204 | 850 | 100 | Plus |
| X | 23542271 | X | 19615023..19615079 | 884..939 | 220 | 96.5 | Plus |
| 3R | 32079331 | 3R | 7722807..7722912 | 143..248 | 215 | 80.2 | Plus |
| X | 23542271 | X | 19615187..19615294 | 965..1070 | 210 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:51:48 has no hits.
FMO02923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:00 Download gff for
FMO02923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shawn-RB | 1592..2664 | 28..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:00 Download gff for
FMO02923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shawn-RB | 1592..2664 | 28..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:19 Download gff for
FMO02923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shawn-RC | 1681..2753 | 28..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:19 Download gff for
FMO02923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19613967..19614143 | 28..204 | 98 | -> | Plus |
| X | 19614213..19614382 | 205..374 | 100 | -> | Plus |
| X | 19614442..19614951 | 375..884 | 99 | -> | Plus |
| X | 19615024..19615105 | 885..962 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:00 Download gff for
FMO02923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19508246..19508415 | 205..374 | 100 | -> | Plus |
| arm_X | 19508000..19508176 | 28..204 | 98 | -> | Plus |
| arm_X | 19508475..19508984 | 375..884 | 99 | -> | Plus |
| arm_X | 19509057..19509138 | 885..962 | 91 | -> | Plus |
