FMO02924.5prime Sequence
1214 bp (1046 high quality bases) assembled on 2008-07-02
> FMO02924.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCACATCAACGGCC
CAAGTGGGCCACAGGCCTATGTGAACGATAGCTTAGGAGATGGCAGCGTC
TTTCCAATGGGACATGGATATCCGGCGGAGTACCAGCACATGGTGCACGC
CCACTGGCGGGGATTCCGTGAGGCACCTATCTACTATCACGCCGGTTTCT
ACATTGCCTTTATCGTCCTCATGCTGTCGAGTATCTTTGGAAATGGACTG
GTCATCTGGATATTCTCGACTTCGAAATCCCTGCGTACTCCATCTAACCT
ATTGATTCTCAACCTGGCCATTTTCGATCTGTTCATGTGCACCAATATGC
CGCATTATCTTATCAACGCCACAGTTGGCTATATAGTGGGCGGAGATCTG
GGCTGCGATATATACGCTTTGAACGGAGGCATCTCCGGGATGGGAGCCTC
CATAACGAATGCCTTCATAGCATTCGATCGCTATAAGACAATATCCAATC
CAATAGACGGACGTTTGAGCTACGGACAGATTGTACTGCTGATACTCTTC
ACCTGGTTGTGGGCCACTCCGTTCTCCGTGCTGCCATTGTTCCAGATCTG
GGGACGTTACCAGCCGGAGGGCTTCCTGACCACCTGCTCCTTCGATTACC
TGACCAACACGGACGAAAACCGACTGTTTGTGCGCACGATTTTCGTGTGG
TCCTACGTGATACCGATGACCATGATCCTGGTGTCCTACTACAAGCTCTT
CACCCACGTCCGCGTGCACGAGAAGATGCTGGCCGAGCAGGCCAAGAAAA
TGAACGTGAAGTCGCTGTCGGCCAACGCCAATGCGGATAACATGAGTGTG
GAACTCCCGGATCGCCAAGGCGGCCCTCATAATATACATGCTCTTCATTC
TGGCCTGACACCCTACTCCGTGGTGGCACTTATCGGATGCTTCGGGAGCA
GCAGCTAATCACGCCCTTCGTCTCAATGCTTCCGTGCCTGGCTGCAGTCG
TGTCCTGTCTGATCCTGGGTCTATGCACCAGTCATCCCAGTATCGTCTGA
GCTGGACCGCGTCTGCGTGCTGCATCGCAAGCATGCCAAATCCGAAATCG
GCGCAGAGAGTGTGCAGTGTTCACGGCATCTTGCACTCACCGTCAAACGC
AAGCTTCCGACATCTGACCCGTCCGTAATGCTAACCTATCTAATCTAAAT
CCTAATCCGCAGCA
FMO02924.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh5-RB | 1572 | CG5279-RB | 297..1338 | 35..1066 | 4900 | 98.8 | Plus |
| Rh5-RA | 1347 | CG5279-RA | 72..1113 | 35..1066 | 4900 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12009139..12009515 | 617..992 | 1740 | 99.2 | Plus |
| 2L | 23513712 | 2L | 12008743..12009089 | 271..617 | 1735 | 100 | Plus |
| 2L | 23513712 | 2L | 12008449..12008684 | 35..270 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:04 has no hits.
FMO02924.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:47 Download gff for
FMO02924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh5-RA | 70..1129 | 27..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:21 Download gff for
FMO02924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh5-RA | 68..1127 | 27..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:46 Download gff for
FMO02924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh5-RA | 68..1127 | 27..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:46 Download gff for
FMO02924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12008445..12008684 | 27..270 | 98 | -> | Plus |
| 2L | 12008743..12009089 | 271..617 | 100 | -> | Plus |
| 2L | 12009140..12009634 | 618..1094 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:21 Download gff for
FMO02924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12008743..12009089 | 271..617 | 100 | -> | Plus |
| arm_2L | 12008445..12008684 | 27..270 | 98 | -> | Plus |
| arm_2L | 12009140..12009634 | 618..1094 | 95 | -> | Plus |
