FMO02927.5prime Sequence
1245 bp (1044 high quality bases) assembled on 2008-07-02
> FMO02927.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCAGCGTCGAA
GGAGGCGATTTGCGGGAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGG
GATGCTTTGCCACCCGGTACTTTGTGACCTTTATGCTTTTCCTGGGCATG
GCCAATGCCTATGTGATGCGCACCAACATGTCGGTGGCCATTGTGGCCAT
GGTGAACCACACGGCCATCAAGTCTGGAGAGGCAGAGGAGTACGATGATG
AGTGCGGAGATCGGGATATTCCTATTGATGACTCTCAGGATGGCGAGTTC
GCCTGGAGCTCAGCTCTGCAGGGCTACATCTTGTCGTCCTTCTTCTATGG
CTATGTCATCACCCAGATTCCCTTTGGCATATTGGCCAAGAAGTACGGTT
CCCTGCGCTTCCTCGGCTACGGCATGTTGATCAACTCCGTGTTTGCCTTC
CTGGTTCCGGTGGCTGCCCGCGGTGGAGGTGTTTGGGGTCTGTGCGCCGT
GCGTTTCATCCAAGGTCTAGGTGAGGGTCCCATCGTGCCCTGCACCCACG
CCATGTTGGCCAAATGGATTCCGCCCAACGAAAGGTCACGAATGGGTGCC
GCCGTGTATGCGGGTGCACAGTTTGGAACCATCATCTCTATGCCACTTTC
CGGCCTGCTGGCTGAATACGGATTCGATGGCGGCTGGCCGTCGATCTTCT
ATGTGTTTGGAATTGTGGGTACCGTCTGGTCCATCGCCTTCCTGATCTTC
GTGCACGAGGATCCCTCTTCGCATCCCACTATTGATGAGCGCGAGAAGAA
GTACATTAACGATTCCCTCTGGGGAACTGATGTTGTTAAGAGCCCTCCCA
TTCCCTTCAAGGCTATCATCAAGTCGCTGCCCTTCTACGCCATTCTGTTC
GCCCACATGGGTCACAACTACGGCTATGAGACTCTGATGACCGGAGCTGC
CCACCTACATGAAGCAGGTGCTCCCGCTTCTCCCTGAAGTCGACGGTCTG
CTCAGCTCCCTGCCCTACTGCCATGGTGGCTCTTCTCAATGTCATCTCGT
GGTCGCCGATTGGAATGATAGCTCGAAAAGAATTCTCCACACGGCCACCA
GAGCTGATCACAGTATGGCCCAGTATGGAACGGGAGTTCGCCTAATCGCC
GCTTCCTTCACGGGGCTTGCACAGAAACTGACCTGCAATCCTCCCATCGG
AGTGGGCCTTATGGAGAGAATACTCACTTCTCGGCTCTCAGGAAT
FMO02927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RD | 2870 | CG8098-RD | 886..2074 | 37..1216 | 5240 | 97.1 | Plus |
| Picot-RC | 2367 | CG8098-RC | 383..1571 | 37..1216 | 5240 | 97.1 | Plus |
| Picot-RA | 2735 | CG8098-RA | 751..1939 | 37..1216 | 5240 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656631..16657194 | 840..277 | 2820 | 100 | Minus |
| 2R | 25286936 | 2R | 16656238..16656568 | 1164..839 | 905 | 91 | Minus |
| 2R | 25286936 | 2R | 16657263..16657440 | 277..100 | 890 | 100 | Minus |
| X | 23542271 | X | 4784486..4784872 | 316..702 | 465 | 74.7 | Plus |
| 2R | 25286936 | 2R | 16663514..16663578 | 101..37 | 325 | 100 | Minus |
| X | 23542271 | X | 4784336..4784422 | 133..219 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:59 has no hits.
FMO02927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:59 Download gff for
FMO02927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 747..1948 | 28..1224 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:05 Download gff for
FMO02927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 744..1945 | 28..1224 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:21 Download gff for
FMO02927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 744..1945 | 28..1224 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:21 Download gff for
FMO02927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16656631..16657194 | 277..840 | 100 | <- | Minus |
| 2R | 16657264..16657439 | 101..276 | 100 | <- | Minus |
| 2R | 16663515..16663585 | 28..100 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:05 Download gff for
FMO02927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12544136..12544699 | 277..840 | 100 | <- | Minus |
| arm_2R | 12544769..12544944 | 101..276 | 100 | <- | Minus |
| arm_2R | 12551020..12551090 | 28..100 | 94 | | Minus |
