FMO02931.5prime Sequence
1236 bp (934 high quality bases) assembled on 2008-07-02
> FMO02931.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCCACATGACACTTCCTAGT
GCGGCTCGCGTGTACACAGATGTCAATGCGCACAAACCGGATGAATATTG
GGACTATGAAAATTATGTGGTTGATTGGGGCAATCAAGACGATTATCAGT
TGGTCCGTAAATTAGGCCGTGGAAAGTATTCTGAGGTCTTCGAGGCCATT
AATATTACGACCACGGAAAAGTGCGTTGTTAAAATTCTGAAACCTGTTAA
AAAAAAGAAGAAAAAGCGTGAAATCAAAATTTTGGAGAACTTGCGTGGAG
GAACTAATATAATAACACTTTTAGCCGTTGTCAAGGACCCATTTTCTCGA
ACACCAGCGTTGATTTTTGAGCACGTCAACAACACAGATTTCAAGCAACT
TTACCAAACATTAACTGATTATGAGATTCGTTACTACTTGTTTGAGCTTC
TTAAGGCACTTGACTACTGCCACAGCATGGGAATAATGCATCGTGATGTA
AAGCCCCACAATGTTATGATAGATCACGAAAATCGAAAATTGCGCCTTAT
AGATTGGGGACTTGCCGAATTTTACCATCCTGGTCAAGAATATAATGTTC
GTGTGGCTTCGAGATACTTTAAAGGTCCCGAATTACTGGTAGATTACCAG
ATGTATGATTACTCACTGGATATGTGGTCACTAGGTTGTATGTTGGCGTC
GATGATATTGCGAAAAGAGCCATTTTTCCACGGACATGATAACTATGATC
ATTTGGTACGCATTGCCAAGGTGCTGGGCACCGAAGAACTCTACGCATAT
TTGGATAAATACAATATTGACCTCGATCCAAGATTTCACGACATTCTACA
GCGTCACTCACGAAAGCGATGGGAAAGATTTGTCCATTCTGACAACCAAC
ATCTAGTTTCTCTTGAAGCACTAGACTTTCTTGAATGAACTTTTACGCTA
TGATCACGTTGATCGACTCATCGCCTCGGCGAAGCAATGGACCAATCCAT
TATTTCTTACTAATTGTCAATGGTCAATGAATCCCAATATCAGCAAGCAA
GCTTTCTAGAATCTTTCGTTTGAGGCCGGTCCAAGTAAAGGGTCATATCA
TAATTCTATCGTATATATCACGACTAGCCTTAGGAATCTGGCCATGACTA
GGCTGGATCTCCACAATACAAAGCGTGCACCGAGCGTTCGAACATTCGAG
TGGGGATTCTAGAGACATCTCACTGGAACTTCATCT
FMO02931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-RA | 1536 | CG17520-RA | 328..1335 | 36..1046 | 4725 | 98.2 | Plus |
| CkIIalpha-RC | 1423 | CG17520-RC | 215..1222 | 36..1046 | 4725 | 98.2 | Plus |
| CkIIalpha-RB | 1561 | CG17520-RB | 353..1360 | 36..1046 | 4725 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23102252..23103251 | 36..1039 | 4565 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 22:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 274..336 | 128 | 72.7 | Plus |
FMO02931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:38 Download gff for
FMO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-RC | 269..1286 | 29..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:07 Download gff for
FMO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-RB | 347..1364 | 29..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:52 Download gff for
FMO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-RB | 347..1364 | 29..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:52 Download gff for
FMO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23102246..23103263 | 29..1051 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:07 Download gff for
FMO02931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23095346..23096363 | 29..1051 | 97 | | Plus |
