FMO02932.5prime Sequence
1254 bp (1046 high quality bases) assembled on 2008-07-02
> FMO02932.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTCAGAC
TCTATCGGAACCGGTGACCGCCAAGGAGTCAGCGTACTGCCAGAACGCCG
CCTACCGCGTGGGCAGCTCCTGCATGCAGGGGTGGCGCATCAACATGGAG
GACTCGCACACCCACATCCTCTCGCTGCCGGACGATCCGGGAGCGGCATT
CTTCGCCGTCTACGACGGGCACGGAGGCGCCACGGTGGCCCAGTACGCCG
GCAAGCACCTGCACAAGTACGTTCTCAAGCGGCCGGAGTACAACGACAAC
ATCGAACAGGCGCTGCAGCAGGGCTTTCTGGACATCGACTACGTTATGCT
ACGCAACAAGACATGTGGTGACCAGATGGCCGGCTCGACTGCCGTAGTTG
TTTTGGTAAAGGACAACAAGCTTTATTGCGCCAACGCAGGCGACTCGCGC
GCCATTGCCTGCGTGAACGGACAACTGGAGGTCCTGTCGCTGGACCACAA
GCCCAATAACGAGGCGGAGTCCAAGCGGATCATCCAAGGCGGCGGCTGGG
TTGAGTTCAATCGCGTCAACGGCAATCTTGCGCTTTCCCGCGCCCTCGGT
GACTATGTATTCAAGCATGAGAACAAAAAACCGGAAGATCAAATCGTCAC
AGCCTTCCCGGACGTGGAGACGCGGAAAATCATGGACGATTGGGAATTCA
TCGTGCTGGCCTGCGATGGCATTTGGGATGTAATGAGCAACGCGGAAGTG
CTCGAGTTCTGTCGCACGCGCATCGGCATGGGCATGTTTCCGGAGGAGAT
CTGCGAAGAGCTGATGAATCACTGCCTAGCACCCGACTGCCAAATGGGAG
GCCTCGGCGGCGACAATATGACCGTGGTGCTGGTGTGCCTGCTGCACGGC
CGTCCCTACAGCGATCTGATAGCCCGCTGCCGAAATGGCAGCCAGGCGAC
TAACAATGATCATGAGGAGCCGGCGACGCGACGAAGGATGAGTCGCAAGG
ACGAGCGGAGGCGGAACCCGATACGAAACGGAAACGCAACCAAATCCTGC
CGATCAATCCATTCGGGTCCATGGACGACGAGGGTGAAGATGGTCGTCGC
AATCTAAACAGGATGGCAGCGATCGAAGGCCACTATATCATAGCGATGCA
AGGCTTTCTAGAACGATTCGCGTTGGCCGCGGCCCAGTAATGCCTTAATC
ATAGCCTATATCTGAATGCATGATCCACATATAGCCTCTAGGAGAGAGAA
TCTC
FMO02932.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17746-RB | 1694 | CG17746-RB | 222..1327 | 40..1138 | 5115 | 98.2 | Plus |
| CG17746-RA | 1577 | CG17746-RA | 247..1352 | 40..1138 | 5115 | 98.2 | Plus |
| Ppm1-RA | 1422 | CG12169-RA | 175..1038 | 40..897 | 550 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3237172..3237666 | 1138..651 | 1760 | 95.4 | Minus |
| 3L | 28110227 | 3L | 3237742..3238076 | 652..318 | 1675 | 100 | Minus |
| 3L | 28110227 | 3L | 3238611..3238893 | 322..40 | 1415 | 100 | Minus |
| 3L | 28110227 | 3L | 581563..582426 | 40..897 | 465 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:24 has no hits.
FMO02932.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:09 Download gff for
FMO02932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17746-RB | 160..1286 | 29..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:34 Download gff for
FMO02932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17746-RA | 236..1362 | 29..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:55 Download gff for
FMO02932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17746-RA | 236..1362 | 29..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:55 Download gff for
FMO02932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3237153..3237664 | 653..1156 | 94 | -> | Minus |
| 3L | 3237742..3238074 | 320..652 | 100 | -> | Minus |
| 3L | 3238614..3238908 | 20..319 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:34 Download gff for
FMO02932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3238614..3238908 | 20..319 | 96 | -> | Minus |
| arm_3L | 3237742..3238074 | 320..652 | 100 | -> | Minus |
| arm_3L | 3237153..3237664 | 653..1156 | 94 | -> | Minus |
