FMO02933.5prime Sequence
1150 bp (1028 high quality bases) assembled on 2008-07-02
> FMO02933.5prime
CTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGATTGAGGCC
CGCACGATGCAGGACGTATCAAAATTCGAATCCAACCAGGTGATCTCGGC
GAAGGTGCTCCGCGGCGAGTACCGGCTACTACGACGCAAGCAGCGCGGCT
CCGTGTGGAAGGTGTATCGGGAAATCGTGCGCACCGATGGTGCCATAATC
AATGGACTCTACTTCTGCACGGGCTGCAAGCGCGTCATGCGATCCTTCAA
CACGTCCAATCTGCGCACCCACAAGTGCCATGTGGACTACCTGCGTACCG
AGGAACTGTGCGAGGAGGGGATCGCGGAAATCCATCCCCCTAAACTAGAC
GATTCGTTGGAGCGCCGCCTGAGCTGGAACTCCTTTCAGCCGTCCGAGTG
GTCATTCCACGCGGTCGAACTGCTGCTCGAGCTTTGGGCAAGGCACTGCG
TCGATTTGCGAGACTCACGCAAGCGGGTCCAGGTTATCTGGAAAATGACG
GGCGAGATGAAGTCACTGGGTTTCACGTTCACGGAGATAAAGAACAAAAT
TGATGACATGGGCCAACAGTATCGGCGAGAATCGCACATGGAAAAGACAA
CTGGACACAAATCCCAGTGGGAATACTTCGAGACCATGAAGATGATATTT
AGTTCCGATCGTAACATAATTGACAATATGCCTCTGGATAAGTCTGGAAG
TGCACCCAATACGACCAGCGAACACAATTCATTTGGCAGTCAACTTGACG
AACCATTGATAGATAGGAACTACTTAAGGTCCCAAAAAGTACACCCTGGA
GAATGGGATAGCTTCGATATGAACGAATATGCGGATGAGCAACAGGAAGA
CGTGGGATGAACTGCGTATTCTGAAGGATAACATAATCAGGGAAATCGAA
AGTCGTCCACAGTTCATTCCCAGGAAAACTATGAAGACGAGCTCGATCAC
AGAATTCCAAGACCGAGGACATGAAAATTGCTAGCGTCAAAGAGCTGCCA
GATTATGGAATAGAGAGGAAAAGCTGGTCTATAAAGAGAAAAATGCAAAC
TTGATGAAATTTTCGTGCGAAGATGTCGTCGTTTCTAGGACTTCATGGAA
TCTTTCTATCTAATCCCAAAGGCGGCGCCAATGCAGCAAGCTTTCAGACA
FMO02933.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp-RA | 1412 | CG17153-RA | 55..1162 | 35..1135 | 5030 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12118971..12119539 | 574..1135 | 1980 | 94.2 | Plus |
| 3L | 28110227 | 3L | 12118311..12118627 | 35..351 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 12118688..12118912 | 351..575 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:33 has no hits.
FMO02933.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:11 Download gff for
FMO02933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17153-RA | 69..1179 | 35..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:39 Download gff for
FMO02933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp-RA | 55..1165 | 35..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:02 Download gff for
FMO02933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp-RA | 55..1165 | 35..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:02 Download gff for
FMO02933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12118311..12118626 | 35..350 | 100 | -> | Plus |
| 3L | 12118688..12118911 | 351..574 | 100 | -> | Plus |
| 3L | 12118972..12119542 | 575..1139 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:39 Download gff for
FMO02933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12111788..12112011 | 351..574 | 100 | -> | Plus |
| arm_3L | 12111411..12111726 | 35..350 | 100 | -> | Plus |
| arm_3L | 12112072..12112642 | 575..1139 | 95 | | Plus |
