FMO02934.5prime Sequence
1225 bp (1000 high quality bases) assembled on 2008-07-02
> FMO02934.5prime
CTTCGTATAGCATACATTATACCAAGTTATCAGTCGACATGGAATTTGGT
AAAAAAAGGTATAAGGGTGGTCGGACACCTTCTATTAGGTCCAGTGAAAG
GCGTCGTCCTCAAAGTGTTTCATCTATATCCACACTATCCCCGAGAGTTG
TTTTGTCCAGATTGGAGCCGAGGGAGTTTGAACGTCTTCGACTATCCTAC
AAAATTGCAATCGACCAAAGAAGATCCAGAAGCTGCCGTGGCATGAACAT
GGGTCAAAAAATTAGTGGCGGAGTCAAAACAGTTAGTCGCAATGATTCAC
AGTCTACATTTAAACCAATAATACCAAGAGAGTTGCAAGCTGATTTCGTT
AAACCAGCGCGAATCGATATATTACTTGATATGCCGCCAGCATCTCGAGA
TCTTCAATTGAAGCATTCATGGAACTCCGAAGATCGGTCTCTTAACATTT
TTGTAAAAGAGGACGACAAGTTGACATTTCATAGGCACCCAGTGGCTCAA
AGTACTGACTGTATTCGCGGAAAAGTCGGACTTACAAAGGGATTGCATAT
TTGGGAAATTTATTGGCCAACAAGGCAAAGAGGAACCCACGCTGTTGTTG
GCGTATGCACTGCAGATGCACCTTTACATTCAGTTGGCTACCAAAGTTTA
GTTGGATCAACTGAACAAAGTTGGGGCTGGGACTTAGGAAGAAATAAATT
ATACCATGACTCAAAAAACTGCGCTGGAGTGACATATCCAGCAATTCTTA
AAAACGACGAAGCTTTTTTAGTTCCAGATAAGTTCTTAGTAGCGTTAGAT
ATGGACGAAGGAACACTAAGCTTCATTGTTGATCAGCAGTACCTCGGTAT
TGCGTTTAGAGGACTGCGAGGGAAAAAACTATATCCAATTGTTCGGCGGT
CTGGGGACACTGTGAATAACATGCGTTACATTGGTGGATAGATCCCGAAC
CCTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAATGGTCG
CACAAACTGGAAGGACCAAATCACAGCTTCACTTCCTTTATCAATGAAAC
ATATTTATTGGATAAAACCGTAAGAGCAGCTTTCAAGAAACATTCGGTGG
CCGGCGGTCAGGTACTGTTATCTATCCATAATCCATATCATAGTCCCCAA
CTAGCTAGGATCTGGCCTGACTATGGCTTGGATCTCCACAATTAAGATAC
GCGCGGCGGCGAGCACAGGAAGCGC
FMO02934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RG | 1745 | CG2944-RG | 246..1290 | 39..1072 | 4885 | 98.5 | Plus |
| gus-RL | 1933 | CG2944-RL | 451..1478 | 56..1072 | 4800 | 98.4 | Plus |
| gus-RM | 1525 | CG2944-RM | 165..1189 | 59..1072 | 4785 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120769..5121655 | 939..56 | 4285 | 99.7 | Minus |
| 2R | 25286936 | 2R | 5117674..5117802 | 1067..945 | 325 | 90.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:19 has no hits.
FMO02934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:08 Download gff for
FMO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RA | 249..1295 | 39..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:27 Download gff for
FMO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1292 | 39..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:45 Download gff for
FMO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1292 | 39..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:45 Download gff for
FMO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5120763..5121652 | 59..944 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:27 Download gff for
FMO02934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1008268..1009157 | 59..944 | 99 | <- | Minus |
