FMO02935.5prime Sequence
857 bp (857 high quality bases) assembled on 2008-07-02
> FMO02935.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCCACGACCGCG
AGGTGCTGCGAATGATCTGGGAGGGCCAGATAGGCATATGCTTCCAGGCG
GATCGGGACGAGATCGTGGGCATTAAGCCGGAGCCTTTCTATCTGATGAT
ATCGCGACTCAGCTACTTGCCTTTGGTGACTGACAAGGTTCGCAAGTACT
TCTCACGCTATATAAGCGCCGAACACCAGGATGGAGCTGTGTGGTTCGAC
TTCAATGGAACGCCCCTGCGACTTCACTATCCAATTGGTGTCCTATACGA
TCTGCTGCATCCGGAGGAGGACAGCACGCCCTGGTGCCTCACCATTCACT
TCTCCAAGTTCCCCGAGGACATGCTCGTCAAGCTCAACTCCAAGGAGCTA
CTTGAATCGCACTACATGTCCTGCCTGAAGGAGGCAGATGTGCTTAAGCA
CCGCGGCCTGGTCATATCCGCTATGCAAAAGAAGGACCACAATCAGCTTT
GGCTGGGATTGGTCAACGAAAAGTTCGATCAGTTCTGGGCCGTCAATCGG
AGGCTAATGGAACCGTATGGCGATTTGGAGTCCTTCAAAAACATTCCCCT
GCAAATCTATACAGACGATGACTTCACGTACACCCAGAAACTGATTTCAC
CGATCAGCGTGGGCGGACAAAAGAAGAGTTTGGCCGATTTAATGGCCGAA
TTATCGACGCCTGTGCGCAGAGCGGTTGGATGTCGCACGCACGGTATTGA
TCTACACGAGGAGACCCAACTGTATGGATGTCCGAGCATCTGAGCTATCC
CGACAACTTTTTGCATTTATCGGTGGACTACAAAGATGTTGCAGCTTTCT
AGACCAT
FMO02935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg5-RA | 1418 | CG1643-RA | 97..905 | 33..840 | 3945 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7322556..7322782 | 620..394 | 1120 | 99.6 | Minus |
| X | 23542271 | X | 7323518..7323674 | 189..33 | 785 | 100 | Minus |
| X | 23542271 | X | 7323157..7323264 | 394..287 | 540 | 100 | Minus |
| X | 23542271 | X | 7323343..7323447 | 290..186 | 525 | 100 | Minus |
| X | 23542271 | X | 7322367..7322472 | 725..620 | 515 | 99.1 | Minus |
| X | 23542271 | X | 7315135..7315251 | 840..725 | 490 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:51 has no hits.
FMO02935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:35 Download gff for
FMO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg5-RA | 60..882 | 25..848 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:58 Download gff for
FMO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg5-RA | 90..912 | 25..848 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:25 Download gff for
FMO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg5-RA | 90..912 | 25..848 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:25 Download gff for
FMO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7315128..7315250 | 726..848 | 94 | <- | Minus |
| X | 7322367..7322472 | 620..725 | 99 | <- | Minus |
| X | 7322557..7322782 | 394..619 | 99 | <- | Minus |
| X | 7323158..7323263 | 288..393 | 100 | <- | Minus |
| X | 7323346..7323445 | 188..287 | 100 | <- | Minus |
| X | 7323520..7323681 | 25..187 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:58 Download gff for
FMO02935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7209161..7209283 | 726..848 | 94 | <- | Minus |
| arm_X | 7216400..7216505 | 620..725 | 99 | <- | Minus |
| arm_X | 7216590..7216815 | 394..619 | 99 | <- | Minus |
| arm_X | 7217191..7217296 | 288..393 | 100 | <- | Minus |
| arm_X | 7217379..7217478 | 188..287 | 100 | <- | Minus |
| arm_X | 7217553..7217714 | 25..187 | 97 | | Minus |
