FMO02937.5prime Sequence
1218 bp (1044 high quality bases) assembled on 2008-07-02
> FMO02937.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCAAGATTAAG
AAGTTCTTTTCGCGGAAGAAGGCGGAGGCTGCCTTTAAGCTCAATTTAAC
TGGCAGCGGCATGGGCACTGGCCACAAGCTGAATTCCCCCAAACAGGAGA
CTCCTTCAAGTAGTTCCCGCCAAAAGTATGAGGCCTATGTGCCACCAAAG
CGAAATGAAATAAGTAACGAGGCCAGGGCAGCTGCCAGTGCGGCACTGGC
GCGCATTGACAAGAAAACATCCAGGGAATTCAATACCTCGCTGTCGGCAG
TGAAGGCACAGGCTAAAAGAGAGCTGGAGGCAGAGCGTCGCCAGAGAGAG
GAAGCCATGGGCACGCCATCAACGACCAGCACATCCACATCGGCTTCCGG
CGGCGACACTCGCAACCTGGCCTGCGAAGGCGTCTTCTTCCGCTGCCCCC
TAATCAGCGAGGAGATTCTACCCAAGAGCGTGTGGAAGGTTCGCATCAAA
GAGTTCCTCTACCAGCAGCTGGAGGCAGATCGCGGCCTCACCGCCTGCCT
GATCATCCACAATTGCAATGTTAAGGAGAAGGCCGACGAGTGCATTGCCA
CGCTAATCCGATATCTGGAGAATCTTATCAAGAATCCCGAGGAGGAGAAG
TTCTGCAAGATACGGATGTCCAACAAAATCTTCAGCGAAAAGGTGCGCTA
CGTGGAGGGTGCCCTGGATGTTCTGCAAGCAGCGGGCTTCAACGAGGTCC
AGATCGATGGCGAACCCTTCCTTTTGTGGACCAAGGAGCAGACGGAGAAG
GATCTCGACTTGCCCACACTAGTGGAAGCTCTCAAGAGCTCGGAGATTAT
TCCCCTGGAGCTGGATCGCAACATTAAAGTCCTACTTCCATCGCAGGCAT
GTCGTGTCGCCCCTCCCCGACGAGTTTTTTCGCCTGTCGCCGGAGGAGAT
CAAGAAGAGCACAGCTGCGATCCGAGGTCATTGCCCAGTCACAGATGCTG
CGGACAAAGGCGATGCGGGACGCGAGAGCAGCGCATTTGCGCATGTTATC
GATACGCTTTAGTCAGGTTAATTCCAATGACTTTTTATCAGCACTTTCAT
GTTGTACGAAAAAAATATCGATGTGTTCGAGCTTGTTCATCTTGCCTGAC
GACAGCCTGGATTTAGCCTTGGGTTTCCACACCAGCGAATTGGCAACCTG
TGGCCCGATTAGAGAACA
FMO02937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42306-RB | 2048 | CG42306-RB | 603..1748 | 35..1164 | 5095 | 97.3 | Plus |
| CG42306-RA | 2399 | CG42306-RA | 954..2099 | 35..1164 | 5095 | 97.3 | Plus |
| CG42306-RC | 1950 | CG42306-RC | 505..1650 | 35..1164 | 5095 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18658950..18659932 | 1067..88 | 4530 | 99 | Minus |
| 2R | 25286936 | 2R | 18659986..18660040 | 89..35 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:57 has no hits.
FMO02937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:41 Download gff for
FMO02937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gint3-RC | 165..1293 | 35..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:54 Download gff for
FMO02937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gint3-RB | 603..1731 | 35..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:59 Download gff for
FMO02937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42306-RC | 505..1633 | 35..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:59 Download gff for
FMO02937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18658920..18659930 | 90..1090 | 98 | <- | Minus |
| 2R | 18659986..18660040 | 35..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:54 Download gff for
FMO02937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14546425..14547435 | 90..1090 | 98 | <- | Minus |
| arm_2R | 14547491..14547545 | 35..89 | 100 | | Minus |
