FMO02939.5prime Sequence
1219 bp (981 high quality bases) assembled on 2008-07-02
> FMO02939.5prime
CTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTCAGCGCCA
CAGCAACAACAACAGTCGCAGCAGAAGCAACAACAACATGTGCGCGTGGT
CGAGCAACAACAGGTGGAACCAGCTGAGGCGGTGACCTCCAGCATGGAAT
CGGAATCCATCTCGGCCAGCAAGGAGCTAACCGGTTTGACGCACGAGTGC
GGCGTTTTCGGGGCAATCGCTTGCGGAGATTGGCCCACCCAAATGGACAT
TGCACACGTGATCTGTTTGGGGCTGGTGGCACTGCAGCATCGTGGGCAGG
AGTCTGCGGGCATAGCGACCAGCGAGGGAAAGTGCTCCAAGAACTTCAAC
GTGCACAAGGGCATGGGTATGATCAGCACCCTGTTCAACGACGACTCCAT
GAAGAAGCTTCGTGGCAACCTGGGCATCGGTCATACACGCTACTCGACCG
CTGGCGGATCCGGAGTGGTTAACTGTCAGCCCTTTGAGGTACATACGACA
CATGGAGCATTGGCCCTGGCCCACAATGGTGAGCTTGTTAACAACGAATC
TCTAAGAAGGGAGGTTTTGGCCAGAGGCGTGGGCTTATCCACGCACAGCG
ACAGTGAGTTGATCGCCCAGTCGTTGTGCTGCGCCCCGGAGGATGTTTCC
GAACTGGATGGACCCAACTGGCCAGCTAGGATCAGGCATTTCATGATGCT
GGCGCCACTCTCCTACTCGCTGGTCATCATGCTAAAGGACAAAATCTACG
CCGTGAGGGACACCTATGGAAATAGGCCGCTATGCATTGGCAAGATAGTG
CCCATCAATGCTGGGCACGGAAATAACTTAGACACACCTGCCGATGGTTG
GGTGGTGTCCAGTGAGAGCTGTGGCTTCCTGTCGATCGGTGCCAGATACG
TCCGCGAAGTGTAGCCTGCAGAGATAGTGCAGCTGTCGCGAAGTGGCTAC
CGCACGAGGTAATTGTGAAAAGACCCGACTTCAAGCGCATGGCTTTTGTA
TATTTGAGTACGTTTACTTCGCCGCGAGAAAGCATTCTTCGAGGGTCTGA
TGGTGTAACCTGTGATGCTGCATGCTGCCGCAGCTGAGGCGAGAGCTTCA
ATGGAGCGAAATTGGGAGTCGTTTCTGAGTCTGTCACGCGCGGGCCATGC
AATGTCCCGGATCTGATTGATGGCAAGGTCTTGACGAATTCTACGTGGAC
GAAGTAATTACACTTTATA
FMO02939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 92..1202 | 37..1137 | 4940 | 96.9 | Plus |
| Prat-RA | 2102 | CG2867-RA | 89..1199 | 37..1137 | 4940 | 96.9 | Plus |
| Prat2-RB | 1932 | CG10078-RB | 355..1186 | 194..1023 | 1125 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7910573..7911611 | 1072..37 | 4760 | 98.1 | Minus |
| 3L | 28110227 | 3L | 6912745..6913526 | 1023..244 | 1005 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:31 has no hits.
FMO02939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:42 Download gff for
FMO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 82..1134 | 25..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:15 Download gff for
FMO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 77..1131 | 24..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:07 Download gff for
FMO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 77..1131 | 24..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:07 Download gff for
FMO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7910573..7911616 | 31..1073 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:15 Download gff for
FMO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3736295..3737338 | 31..1073 | 97 | | Minus |
