FMO02942.5prime Sequence
1210 bp (1008 high quality bases) assembled on 2008-07-02
> FMO02942.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGTCGGACCTTTCTTACCTG
GACACGTTGGGCAACAAGGAGCTGCTGGCCAAGTGCCTGGAGCACGGCCT
GCCCGGTGTTCCCGTGACGGACAGCACCCGCAGCGTCATAATTCGCCGAC
TAAAGGCCAAAATCACCGGGGTTCCGCTGAACAAAAGCAAATCTGCAAGT
AAGAAAGCGATTCCGAGGCGTGAGACCGTACACGGCAGCCAGGTAACGAC
GCCCACATCGGAGCCAGTGCGTCGTACGCCCGGCAAGAGTGCAGGACGCA
CTAGCAGCAACAACAACAAGATCAGCGAACAAAGTCGTCGCACAATCGCC
TATGGACTAGACAACACCTCGATCTCGGGAAGATCTGTGCAGACTACTAC
CACGGTGTCGGATATGAGCTCCCAGTCGGAGGACGACGACTCCTACATGG
TGGACTCTCCGGTGCCTAATTACTCCAAGGACCAGCAGCCTAGACGTTAT
GTTTCTCTAGCCAAATCCGGAGTTTTGACCACATCTTACACACGCGAAGT
TGACCAGCCGCTGTACGAACAGGAGGATATACCACGCAGCTACACCTACG
AAAGACCCCATGTGCCAGCCGCCACTCTTCACGCACTTCCCACATACGAG
CCACGCATCGAACCTTCGACATACAGACCCACAGATTTGGGTTTTTCGCG
TCCCCTGCTGACTCAAACCAACTTAAACTCAACCAGCTACGAGGAGTCAT
CTACGTACAATCCAAAACTTTCACCCATTTCGCCAAGAAACACTTTCAGC
GGATCCGCTAGGCCTTTTGGTGGCCCAGCACCAGCTCCAGCACCCATTCG
CCAGCGACAGAGTGTTCCAGTTAGTGGATCCAATCTGGCCCGTGTTCGCC
TGCTCCAGCCGACCACCGCAGTAAACACTCTATATCAACAACTAAATGAA
TTCTACGATCAGCCGAATGACGCAAGCGACTCATGAAGACGGAGAGCGAG
TCCGAAGGTCGAGAAGTACCATCAATAGCCATTTCCAAAAGAATCGCTTC
TCGACGCTGCTAGAAACTTCTTGTGTCAAGCAAGCCTTTCTAGAACCATC
GGATTGGCGCGCGGACTAAGTAGTGTCATAATCTAAGCTATAATCTATCT
AATCAACTAGCGTAGGAAATCTGGCCATGAACTAAGTGGCTTTGGAACTC
TCTCCACATT
FMO02942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bocksbeutel-RB | 1535 | CG9424-RB | 74..1113 | 30..1066 | 4990 | 98.9 | Plus |
| bocksbeutel-RA | 1435 | CG9424-RA | 74..1113 | 30..1066 | 4990 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9589898..9590929 | 1059..30 | 4895 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 291..329 | 111 | 79.5 | Plus |
FMO02942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:42 Download gff for
FMO02942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 59..1110 | 30..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:49 Download gff for
FMO02942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..1125 | 30..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:51 Download gff for
FMO02942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..1125 | 30..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:51 Download gff for
FMO02942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9589904..9590929 | 30..1053 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:49 Download gff for
FMO02942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5415626..5416651 | 30..1053 | 99 | | Minus |
