FMO02943.5prime Sequence
831 bp (831 high quality bases) assembled on 2008-07-02
> FMO02943.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCAGGCTT
ACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCG
AACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCC
ACTGATTGCTGGGCGAAACTTCGGGGAGGTACAACAAGTGGCAGGAGCAG
CTGCTGCCCCAGCGGCACAGGTACCTGCTGATCCTCAGATTAATGGAGCG
CCGCAGAACAGAAATTTTCCCAACATTCAGGAGGAACCGGAAATGCACGA
CTGGCTGGATAGTTTCTTTAGCTTTACGCGATTGGCCATTTTTGTGACTG
TCCTGTACTTTAACTCCTCAGCGCTGCGTTGTTTACTGGTGGTGCTCATC
GCGGGTGCGATTTATCTATATCACATTGGTGTCCTTCGACGTCGCCGCGA
GCGGAACAATAACAACATAAATCGTAACAATAATGCTGGCGATGCGGCCG
CCTTTGCTGCAGTGCAGCAAATTCAGCGCATGATGGATGCGGCCGTGCAG
CGGGAGAACAACGATCCCCAGGCGGCCAATGAGCCTGGTGCAGTGCCAGC
GGCTGGACCTGCTGCTGCTGGTGAACAAAGATGCAATCGATGCACCTCCG
GCTGGGGCTCCCGTTGCTCCAGCATCCGCTGCTAATCCAGAACCGACTGA
CGTTTCCGCGGAAGCTGTGGAACCACCAAAATGCCAATAATTCTGTGATT
TCCGTTGTGCGCACCTTTGTCATCACGTTCTTCACCTCGCTGCTGCCCGA
GGCGCCGGCGCTCGCAAGCTTTCTAGACCAT
FMO02943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Herp-RC | 2560 | CG14536-RC | 1168..1941 | 38..813 | 3830 | 99.7 | Plus |
| Herp-RA | 2117 | CG14536-RA | 957..1730 | 38..813 | 3830 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7796933..7797326 | 813..418 | 1880 | 99.5 | Minus |
| 2L | 23513712 | 2L | 7797397..7797733 | 417..81 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 7798163..7798206 | 81..38 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:39 has no hits.
FMO02943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:43 Download gff for
FMO02943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RB | 892..1665 | 38..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:23 Download gff for
FMO02943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 957..1730 | 38..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:18 Download gff for
FMO02943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 957..1730 | 38..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:18 Download gff for
FMO02943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7796933..7797326 | 418..813 | 99 | <- | Minus |
| 2L | 7797397..7797732 | 82..417 | 100 | <- | Minus |
| 2L | 7798163..7798212 | 32..81 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:23 Download gff for
FMO02943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7796933..7797326 | 418..813 | 99 | <- | Minus |
| arm_2L | 7797397..7797732 | 82..417 | 100 | <- | Minus |
| arm_2L | 7798163..7798212 | 32..81 | 92 | <- | Minus |
