FMO02945.5prime Sequence
1255 bp (874 high quality bases) assembled on 2008-07-02
> FMO02945.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAAGAACTCCGC
CATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCGTTTGACCTGGTACA
AGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGGACTCACAGGTCCTG
CCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAGGAGAAGCACATGGT
CGTCTGGGTGGAGTCAGCCGTCTTACAGGACAAGCTGCTACGGGATGATG
TTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAGTGCATCAACAGTAC
GCCGGAGTAAGAGCGCGTTTCCTGGATCTCCGTGAAAAGCTAGTGACCTT
TAAAGATGGCCGCGATGACCTGACCGATCGGATTGACTTTATCGTCTGCC
TGGGAGGCGATGGCACTCTGCTGTACGCCTCACAGCTGTTCCAGCAATCT
GTCCCACCGGTGATGGCCTTCTATCTGGGCTCCCTTGGGTTTCTTACGCC
CTTCCAGTGCGACAACTTCCAGGAACAGGTGACCAATGTCCTGGAGGGTC
ATGCTGCCCTAACGCTACGTAGTCGCCTGCGCTGCTCCATCCACCGCAAG
GGCGAACGCCGCAAGGAATCGCTTCTGCACTCGGTGGGTGGTAATCTCCT
GATACCGAGTTTCCAAAGGCAGCTCAACTACGTGGAGCTTAACAACGGAC
AAACAGGAAAAGCTGGCAGCAATAATAACAATGGCCACAACAATAGCATC
CTGGTGCTTAACGAGGTGGTCATCAACCGAGGACCCTCGCCGTACCTGAG
CAACATTGATATCTTCTTGGAGGGCAAATACATTTACGTCGGTGCAGGGC
GATGGTCTGATCGTTATCGACCCCCACGGGAAGTACAGCATATGCCGGCA
GCAGCCCGGTGCCTCACATGATCCAATCCCTCGGTGCAGGCGTTTTGGTG
ACGCCCATTTACCCCGCACTCGCTGAGTCTCAAGTCCAATTGTGGGTGCC
CGCCGAATGGAGCTAACAAAATCATTTCACCTGATAGCCGCAACACCTCC
AGCGTTTCTTCTACGACGCAACGACCAGAATCTGAACATGGGGAACGCCT
GGGAAGTGACACCCTCGATCTATCCGTGCCTACATTGGTCTCCCAGGAAC
CAATCTCGATGGATGACTCCCTTGCCGAGGTCTGCATGACGTACCCAGCG
CAAATTCCTGGATGAACTGTCGGAACCTTGTCACCACTTCGGGGGCCGGA
AAGAA
FMO02945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1989 | CG6145-RF | 336..1486 | 37..1186 | 4755 | 95.3 | Plus |
| CG6145-RE | 1843 | CG6145-RE | 190..1340 | 37..1186 | 4755 | 95.3 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 173..1323 | 37..1186 | 4755 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538238..13538855 | 977..354 | 2635 | 97.8 | Minus |
| 2R | 25286936 | 2R | 13538972..13539288 | 353..37 | 1570 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13549306..13549536 | 584..354 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13549668..13549856 | 221..36 | 445 | 83.6 | Minus |
| 2R | 25286936 | 2R | 13549072..13549224 | 895..741 | 300 | 82.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:41 has no hits.
FMO02945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:43 Download gff for
FMO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 99..1144 | 31..1078 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:53 Download gff for
FMO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 165..1210 | 31..1078 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:56 Download gff for
FMO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 165..1210 | 31..1078 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:56 Download gff for
FMO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13538204..13538855 | 354..1012 | 96 | <- | Minus |
| 2R | 13538972..13539296 | 31..353 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:53 Download gff for
FMO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425709..9426360 | 354..1012 | 96 | <- | Minus |
| arm_2R | 9426477..9426801 | 31..353 | 98 | | Minus |
