FMO02946.5prime Sequence
1212 bp (1043 high quality bases) assembled on 2008-07-02
> FMO02946.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTTCGCAAAT
TTGGAGGTCTGTTGGCCCAGCAGGTGGGTCAGCAAGCACGTTTCACCGCC
GCGAGTCGCACATTTTCCTCGACAAAAGCGCTGCACAAAGATCCAGCGAC
CCAGGAAGCAGAGGCGGCGCCACCGAAGAACATCCTTGTGGAAAAGGATA
AGAACATCACGCTGATCGGCATCAATCGACCGCAGCAGCGTAATGCCATC
GATTCGCTTACTGCATCGCAGCTTTGCGACGCCTTCGCCAATTTCGAGGC
GGACGACACGTCGCCGGTGGCCGTGCTGTACGGCGTGGGCGGCTCCTTTT
GCTCCGGCTTCGACATCCTGGAGATTAGCACCGACGAGAAGGAGGAGATC
AGCGTGGACATCCTGATGCGACCGGAGGGCTCCGTGGGTCCCACGCGTCG
CCAGATCAAGAAGCCGGTCGTGTGCGGCATCAATGGCTACTGCATAGCCA
ACGGTCTGGAGCTGGCTCTCATGTGCGATCTGCGCGTGATGGAGGAGTCC
GCAGTACTGGGATTTTTCAATCGACGCTTTGGAGTGCCAATGCTCGATGC
CGGCACCATCCGGCTGCCGGCTATGATTGGATTGTCGCGTGCCCTGGACC
TGATACTTACGGGACGTCCGGTGGGCTCCCAGGAGGCCCACGACATTGGA
CTGGTCACAGGATTGTGCCCACAGGCACGGCCTTGGGCAATGCCCTGGAG
CTGGCCACCTGTCTGGCCAAGTTCCCGCAACGCGCGCTCATCCACGATCG
CAACTCGGTCTACTCGAGCACGTTCGAGACCTCACCGTTCCACCAGGCGG
TGCAGAATGAAGTGATGTTCACGTCCCGTGAAATCATCGAGGACATGCAG
AACGGCATCAAATGGTTCAACCAGACCTTCAAGCCGGACACCACCGCATT
CGTGGCTAAAGCGCGACCGCTCGATGGCGACTGGGACGATGAGAAGTGGC
TGAGCTGCAGCGCAAAAAGAAAAACTAAAACAGGAGCAGGAGCTGCTTCT
GGCTGAGGCGAAAAGCAAAAGCAGCTGAAGGCGCAAAAAGGTCGAAAAAG
AACCGAGGAAAGGCGGCTGAAGTGTCGATAGTAGATCCCATGAATAAGTA
ACCAAAAAGGCAAGCCTTCCGAACATTCGTTTGGGCGCGTCCAGGTAAGT
GTATAAATCATA
FMO02946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5844-RA | 1355 | CG5844-RA | 84..1206 | 37..1148 | 5120 | 97.9 | Plus |
| CG5611-RC | 1375 | CG5611-RC | 470..548 | 507..585 | 200 | 83.5 | Plus |
| CG5611-RA | 1096 | CG5611-RA | 470..548 | 507..585 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12434415..12435202 | 139..925 | 3860 | 99.6 | Plus |
| 3R | 32079331 | 3R | 12434242..12434345 | 37..140 | 520 | 100 | Plus |
| 3R | 32079331 | 3R | 12435262..12435413 | 926..1074 | 410 | 92.2 | Plus |
| 3R | 32079331 | 3R | 27635513..27635591 | 585..507 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:10 has no hits.
FMO02946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:00 Download gff for
FMO02946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5844-RA | 74..1202 | 29..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:58 Download gff for
FMO02946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5844-RA | 74..1202 | 29..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:07 Download gff for
FMO02946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5844-RA | 78..1206 | 29..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:07 Download gff for
FMO02946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12434240..12434345 | 30..140 | 95 | -> | Plus |
| 3R | 12434417..12435202 | 141..925 | 99 | -> | Plus |
| 3R | 12435262..12435494 | 926..1148 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:58 Download gff for
FMO02946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8259962..8260067 | 30..140 | 95 | -> | Plus |
| arm_3R | 8260139..8260924 | 141..925 | 99 | -> | Plus |
| arm_3R | 8260984..8261216 | 926..1148 | 91 | | Plus |
