FMO02950.5prime Sequence
653 bp (653 high quality bases) assembled on 2008-07-02
> FMO02950.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTTCGCAATCTG
TCCGTGTGTCTGATATCATTTATCGGGCTCTGGTGCCTGAGCAATACTCA
CACCCAGCGCCTGCCCCCAGAAGGGCGAATGCGCCCCTTGCAAGACGACT
CGATCCGCTCTCCCGTGGACCGCGACATAGTCTTTCCGGAGTTAGACGCG
GGACCAGGCAAGCCCGAGGAGAAGATGTGGTTTCACATAACAGACTTTCA
ATTTGATCGGGTGGAGGGCCCGACCCAGCCCAAGCCCAAGCCCAGACAAT
ACCCCCCGCCGCCGATGCCCGGCCAGCCCTTTCCGCCGCCCCCCGGGGGC
TTTAAAAAGAAGGAAAACAAGCAACGCCGCCTCTGCGAGCAAAAATATTC
CGAATATGTGGAGCGCATCTTTCCCAATGATACCGCAGTGGCTGCCGATG
CCAACGACGCAGACTTCGATGGTCGGGTCCTGGCCCGGCCCGGCTGCCGT
GGGCTTCGAGTCGGACAGAGGGCAAGTGGACTACAAATGTGGCGGCAGCT
TGATAAGCGAGAGATTCGTGCTTACCGCAGCCCACTGTACATCCATATAC
GAGGCGCCCCCCAAGTGGGTTCGCATCGGGGACCTGCAAGCTTTCTAGAC
CAT
FMO02950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14642-RA | 1344 | CG14642-RA | 23..622 | 36..635 | 3000 | 100 | Plus |
| CG14642-RC | 1305 | CG14642-RC | 23..639 | 36..635 | 2820 | 97.2 | Plus |
| CG14642-RB | 1270 | CG14642-RB | 23..639 | 36..635 | 2820 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4242338..4242695 | 393..36 | 1790 | 100 | Minus |
| 3R | 32079331 | 3R | 4241977..4242088 | 603..492 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 4242174..4242277 | 493..390 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:41 has no hits.
FMO02950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:12 Download gff for
FMO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14642-RA | 92..697 | 36..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:46 Download gff for
FMO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14642-RA | 23..628 | 36..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:05 Download gff for
FMO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14642-RA | 23..628 | 36..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:05 Download gff for
FMO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4241978..4242087 | 493..602 | 100 | <- | Minus |
| 3R | 4242175..4242273 | 394..492 | 100 | <- | Minus |
| 3R | 4242338..4242695 | 36..393 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:46 Download gff for
FMO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 67700..67809 | 493..602 | 100 | <- | Minus |
| arm_3R | 67897..67995 | 394..492 | 100 | <- | Minus |
| arm_3R | 68060..68417 | 36..393 | 100 | | Minus |
