FMO02952.5prime Sequence
1225 bp (1082 high quality bases) assembled on 2008-07-02
> FMO02952.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGAGGAAGT
CATCGGAACCGTTAAGGAGGTGCTGAAGGGCATCATCGAGAATGTGAACG
CGCCGAAGAACGAGTCGGCGCCGGGCGAGAAGAAGCCCTCGACTCCGGAG
GGCATGGCGGTGGCCTACAGCAGCCTGGTGGTGATGGCCATGCTGCCCAT
CATCTTCGGCTCCATCCGCTCCGTGAAGCTGCACAAGCTGAAGAAGTCAA
CGGGCGAGAAGGCGGACACGATGACCAAGAAGGACGCCATGTACTTCCCG
CTGATCGCGTCGGCAGCCCTCTTCGGGCTGTACCTGTTCTTCAAGATCTT
CCAGAAGGTGCACATCAACTACCTGCTCACCGGCTACTTCTTCGTGCTGG
GAGTTATTGCTCTGGCGCACCTGCTCAGTCCGGTGATCAACTCGCTGATG
CCCGCCGCCGTGCCGAAGGTGCCCTTCCACATCCTGTTCACTAAGGGGGA
GGGCAAGCACAAGGAAGACATCGTTAACTACAAGTTCTCCACGCACGACA
TTGTCTGCCTGGTGATCTCCTCGGCGATCGGAGTGTGGTACCTGCTCAAG
AAGCACTGGATCGCCAACAATCTGTTCGGTCTGGCCTTCGCCATCAACGG
CGTGGAGATGCTGCACCTGAACAACTTCGTCACGGGCGTCATCTTGCTGA
GCGGCCTGTTCTTCTACGACATCTTCTGGGTATTCGGCACCAACGTGATG
GTCACCGTGGCCAAGAGCTTCGAGGCGCCCATCAAGCTAGTGTTCCCCCA
GGACCTGATCGAGAACGGCCTGAACGCCTCGAACTTCGCAATGCTGGGAC
TAGGCGACATCGTTATTCCCGGGCATCTTCATCGCTCTGCTGCTGCGCTT
CGACGACAGCAAGAAGCGCAAGACGCGCATCTACTTCTACTCCACGCTGA
TTGCCTACTTCCTTGGGCCTGCTGGGCACCATCTTCGTGATGCATGTGTC
AAGCATGCGCAGCCGGCTCTGCCTCTACCTGTGCAGCCTGCATGGGCACG
CCCCCTCCTGGTGACCCTCATCCGCGGCGAGCTGAGGGCCTCTTGCCTAT
GAGGATCATCCCGAGAGAAAGCCGAAAAGAAGGTAGAGGTAGATAGGGCC
TTCAGCTCTGCTCGGTCAAAGAAGGATCCGAAAAGCAGCAGCCTTTCTAT
ACACATCCTTTGGGCGCCGGGGCCT
FMO02952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spp-RA | 1736 | CG11840-RA | 111..1210 | 36..1133 | 5150 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 543429..544268 | 1085..245 | 3830 | 98.6 | Minus |
| 2L | 23513712 | 2L | 544333..544543 | 246..36 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:24:27 has no hits.
FMO02952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:13 Download gff for
FMO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 77..1193 | 29..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:53 Download gff for
FMO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 103..1219 | 29..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:38 Download gff for
FMO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 103..1219 | 29..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:38 Download gff for
FMO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 543416..544266 | 247..1096 | 98 | <- | Minus |
| 2L | 544333..544546 | 29..246 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:53 Download gff for
FMO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 543416..544266 | 247..1096 | 98 | <- | Minus |
| arm_2L | 544333..544546 | 29..246 | 98 | | Minus |
