FMO02954.5prime Sequence
1110 bp (1095 high quality bases) assembled on 2008-07-02
> FMO02954.5prime
TTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGTCGAAGAACA
AGATAAACACAACGTCCGCAACGGCGGCCAGTGACACGAATCTAATCGAG
GTGAAATCGAAGTTCGATGCAGAGTTTCGGAGGTGGAGCTTCAAGCGAAA
TGAGGCGGAGCAGAGCTTCGACAAATTCGCATCCCTCATTGAGCAGCTGC
ACAAGCTGACCAACATCCAGTTTCTCATACTCTACATCGATCCGCGGGAC
AATGATCTGTTGCCGATTAACAACGACGATAACTTCGGCCGGGCCCTGAA
AACAGCACGTCCACTTTTACGGGTCATTGTGCAGCGAAAGGATGATCTTA
ATGAGTACTCTGGCTTTGGAACGATGAAACCGAGAAACCTCATCGGCAGC
ATACTGATGGGCCATACGCCAGTGAAGACAAAGGCGCCATCGATATCCAT
ACCGCACGATTTCCGTCAAGTCTCGGCCATTATAGATGTGGATATAGTGC
CGGAAACGCATAGAAGAGTGCGGCTACTGAAGCACGGCAGCGATAAGCCC
CTGGGATTCTACATACGGGATGGCACCTCTGTCAGGGTGACGGCCAGTGG
GCTAGAGAAGCAGCCGGGCATTTTTATATCCCGTTTGGTTCCGGGCGGTC
TGGCCGAAAGTACTGGCCTGCTGGCCGTCAACGATGAGGTGATCGAGGTA
AATGGCATCGAAGTGGCTGGCAAGACTCTGGATCAAGTCACCGACATGAT
GGTGGCCAACAGCTCCAATCTGATAATCACCGTGAAGCCGGCCAATCAGC
GCACACTGACGTCCACACATCGCGGATCCTTTTCAAGGAACAGCCAGCTG
TCCAGTGGGTCACATCACACTAATAATACAAACACCTCCGACGAGATCGA
GCACGACGATCAGGACGATAATGTGGACTTAACGGGCGTCACCCTCGACG
AGAGTCCAACGTCACGTCAGCGGCAATCACAACCATCAGCGCCATTATCC
TCATCACCCTCGTCGCACCACCAGCAGGCAGCCTCAATGCGTCCACGATA
ATGGCAGGCGATGTTCAAGGATGGAGTGCTGCATTTGGGCAAGCTTTCTA
GAACATTCGG
FMO02954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-6-RB | 2564 | CG5884-RB | 300..1352 | 38..1087 | 5100 | 99.2 | Plus |
| par-6-RA | 3032 | CG5884-RA | 300..1352 | 38..1087 | 5100 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17704667..17705416 | 341..1087 | 3460 | 98.9 | Plus |
| X | 23542271 | X | 17704370..17704604 | 111..345 | 1160 | 99.6 | Plus |
| X | 23542271 | X | 17703651..17703725 | 38..112 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:35 has no hits.
FMO02954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:52 Download gff for
FMO02954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 318..1375 | 31..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:09 Download gff for
FMO02954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 295..1352 | 31..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:22 Download gff for
FMO02954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 295..1352 | 31..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:22 Download gff for
FMO02954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17703638..17703725 | 25..112 | 91 | -> | Plus |
| X | 17704372..17704600 | 113..341 | 100 | -> | Plus |
| X | 17704668..17705416 | 342..1087 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:09 Download gff for
FMO02954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17597671..17597758 | 25..112 | 91 | -> | Plus |
| arm_X | 17598405..17598633 | 113..341 | 100 | -> | Plus |
| arm_X | 17598701..17599449 | 342..1087 | 98 | | Plus |
