FMO02955.5prime Sequence
1262 bp (1054 high quality bases) assembled on 2008-07-02
> FMO02955.5prime
TCGTATAGCATACATAAAACAAAGTTATCAGTCGACATGACGACCACATA
TGTCACTGCGGGTCCAGTGCCCGTCCAGCAAACCACATACATCACCACTG
GACCCCAGCAGACCACGTATATCACCAATGGACGCCAACAACAACCACCA
CCGCCCCCACCACCAACCACGGTGATCATCACCACCCAATCGAACAGCCG
ATGGGCAACCCCTACTCAAACGCAATCTGGAACAGCAGCTACCCTTCTCT
TTGTGTATGCTGGTATGGACATGGCCCAAGGTCTTGGTTGGAACTTGACT
GCCGTTTCCGCCAACACCCTGGAGTTCCAGTACAGTTGGTTTATTGGCGT
TATTATCGGAGCTGTGGTGTCCGCCATTACATCAGCATTTCTGCCCAAAA
TAGTATTTTATGGTCTGGGTGGTGTGATGAACCTAATTGACGCCATTATC
TTTGTGAGTGCTCCATATGAGTACGAGTCGATCCTGGCCGCCCGATATGT
GGGAGGAGTGGGCATTGGGTTAATCACTGTGCCATTCCTAATCCACAGCG
CAGAGATCGCTTCGAGTACCAACAGAGGAACCTGCTGTGCATTGGAGCAA
TATGGTCTGGCATTGGGAGTGGCCATTCAAGTAATCTACGACTCACAGTG
GTCTCAGGGATTGGGCATGACCATCAATCGAGTACACGGAATTTTTGGAA
TCGTTTTTACGGCCATTGCGCTGGGAAGTGTAGCCATCACGATCGACTCG
CCGATCTTCTATATCCGCCAGATCCAGGAGCAGAGGGCACGTGCCAGTGT
GAAGCAGCTAATGGGATCCTATTGGACTCGAGAGGCTGGAGATCGAGCCT
ACGACGAGGCAAAGCTATACGTGGTGGAAGGCAGCGCTCAAGGAGTAGGC
GAGCAGCTGGGAGAGTCTATGATGCCCTTTCTCAAGCTGCTGCTCTTCCG
CTGCTTCGTTGCTTTCACCTTCTCGGTGCCACTGTCATATTCATACTGAC
ACACGGAGCTGGTGGAGGGCACCCTGCACTCCTGGCCACGATTATATTGG
ACTCTCGTCTGATCGGTGCCTGATCACTTCGCGGTTCTGGGACCGGTGGA
CGGAATTGGTCTACTAACTGGGACTCTAGTGCATGGCTGGAATAATGCTG
GGCATGGCGGATTACGGGGAACTAAGGCCAATCCTCCAGAACTTAGTGGC
AAGGTGACGCTGGACATGGCATCAGTCTCTCCCGGTTTCTTCATTGGCAG
ACTCTCCGGTAC
FMO02955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17930-RA | 1653 | CG17930-RA | 95..1326 | 37..1244 | 5170 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16328439..16329196 | 412..1158 | 3045 | 95.9 | Plus |
| 3R | 32079331 | 3R | 16327943..16328144 | 37..238 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 16328202..16328378 | 236..412 | 885 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7048..7115 | 965..900 | 137 | 69.1 | Minus |
FMO02955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:48 Download gff for
FMO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 86..1134 | 30..1070 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:02 Download gff for
FMO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 87..1135 | 30..1070 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:52 Download gff for
FMO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 87..1135 | 30..1070 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:52 Download gff for
FMO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16327931..16328144 | 19..238 | 95 | -> | Plus |
| 3R | 16328205..16328377 | 239..411 | 100 | -> | Plus |
| 3R | 16328439..16329104 | 412..1070 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:02 Download gff for
FMO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12153653..12153866 | 19..238 | 95 | -> | Plus |
| arm_3R | 12153927..12154099 | 239..411 | 100 | -> | Plus |
| arm_3R | 12154161..12154826 | 412..1070 | 98 | == | Plus |
