Clone FMO02956 Report

Search the DGRC for FMO02956

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:29
Well:56
Vector:pMK33-CFH-BD
Associated Gene/Transcriptcdc2c-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02956.5prime Sequence

997 bp (997 high quality bases) assembled on 2008-07-02

> FMO02956.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGACCACCATTC
TAGATAACTTTCAACGCGCCGAAAAGATTGGCGAGGGCACCTACGGTATA
GTTTACAAAGCGCGTAGCAACTCCACCGGCCAGGATGTGGCCCTCAAAAA
GATTCGGCTAGAAGGCGAAACGGAGGGTGTTCCTTCGACGGCCATTCGAG
AGATCTCCCTGCTGAAGAACCTTAAGCACCCAAATGTGGTCCAACTATTT
GACGTAGTCATTTCCGGCAACAATCTGTACATGATATTCGAGTACCTGAA
CATGGATCTAAAGAAGCTGATGGATAAGAAAAAAGACGTGTTCACCCCTC
AGTTGATAAAGAGCTATATGCATCAGATATTAGATGCCGTCGGCTTTTGC
CACACGAATCGTATCCTGCATCGCGATCTCAAGCCCCAGAACCTTCTCGT
AGACACGGCGGGCAAAATAAAGTTGGCTGACTTTGGCCTAGCAAGGGCCT
TCAACGTGCCTATGCGGGCGTACACACACGAAGTCGTCACCCTCTGGTAC
CGAGCTCCAGAGATTCTGTTGGGCACGAAATTCTACTCCACGGGCGTGGA
CATCTGGAGTCTAGGCTGCATTTTCTCTGAAATGATTATGCGCCGCTCCT
TGTTTCCTGGAGACAGCGAGATCGATCAACTTTATAGGATTTTCCGTACC
TTAAGCACACCTGATGAAACAAATTGGCCTGGTGTGACGCAGCTGCCAGA
CTTTAAGACCAAGTTCCCTAGATGGGAGGGAACTAACATGCCACAACCCA
TAACCGAACACGAGGCGCACGAACTCATAATGTCAATGCTGTGCTATGAT
CCCAACCTGCGCATCTCAGCCAAGGACGCACTGCAGCACGCTTACTTCCG
CAATGTGCAGCATGTTGACCATGTAGCCCTGCCTGTAGATCCCAATGCCG
GCAGCGCTTCGCGTCTAACGCGGCTCGTCGCAGCTTTCTAAGACCAT

FMO02956.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk2-RC 2224 CG10498-RC 75..1016 38..979 4710 100 Plus
Cdk2-RB 1215 CG10498-RB 75..1016 38..979 4710 100 Plus
Cdk2-RA 1140 CG10498-RA 75..1016 38..979 4710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20736731..20736929 634..832 995 100 Plus
3R 32079331 3R 20736090..20736286 165..361 985 100 Plus
3R 32079331 3R 20736509..20736672 471..634 820 100 Plus
3R 32079331 3R 20736984..20737131 832..979 740 100 Plus
3R 32079331 3R 20735697..20735824 38..165 640 100 Plus
3R 32079331 3R 20736339..20736451 360..472 565 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:13:19 has no hits.

FMO02956.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:46 Download gff for FMO02956.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RB 73..1019 31..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:28 Download gff for FMO02956.5prime
Subject Subject Range Query Range Percent Splice Strand
cdc2c-RA 70..1016 31..979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:14 Download gff for FMO02956.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk2-RA 70..1016 31..979 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:14 Download gff for FMO02956.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20736732..20736929 635..832 100 -> Plus
3R 20736985..20737131 833..979 100   Plus
3R 20735694..20735824 35..165 98 -> Plus
3R 20736091..20736286 166..361 100 -> Plus
3R 20736341..20736451 362..472 100 -> Plus
3R 20736511..20736672 473..634 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:28 Download gff for FMO02956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16561416..16561546 35..165 98 -> Plus
arm_3R 16561813..16562008 166..361 100 -> Plus
arm_3R 16562063..16562173 362..472 100 -> Plus
arm_3R 16562233..16562394 473..634 100 -> Plus
arm_3R 16562454..16562651 635..832 100 -> Plus
arm_3R 16562707..16562853 833..979 100   Plus