FMO02957.5prime Sequence
1212 bp (1060 high quality bases) assembled on 2008-07-02
> FMO02957.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAACCTCGAGCT
CCAGTCCAGTAAAGCCCAGGAGAAAAGACAAGGACGAAGATGGTCGTGCA
GAGCAGGAGGATTCCGCAGATCAGGTGGGCGAGCCGCACAGGAAGCTTTT
GCGCCTGGGCGACATCCTTGAAACGAACGAAGTGCTCCTGAACGAGGCGT
ATCAGCAACCGGAACTTACCAAGTGGCTCCAAACAGCCTGGACGGAGGAG
AAGAGCCAAGGGACCAAGGAGACGCAAACCGGTGCTCAGGTCTTCTCGGA
TCCCTTTCAAATCTGCCTTCTGCCCGGCATGCTGGAGAAGGGCCAAAGCC
AGGCGCTGGTCGCCGAGATCATCCAGAAGGTGCAGTGGTCGCGCAAACAG
ATGGATTTGTATGAGTTCTACCAGAGCGCCGACCTCTCCAACATGCCCGC
TTGCCGACTGTTGACCAACTTCCTGCAGGTGCTGCGCAAACAAGTGCGTC
CCTGGCTGGAGAAGGTTACCAACCTCAAGCTGGACTATGTGTCCGCCTCC
TGCAGCATGTACACCTGCGGCGACTATCTGCTCGTGCACGACGATCTGCT
TAAGGACCGACAAGTGGCCTTCATTTACTATCTATCGCCTTGGGAAGGAG
CGGAGGAATGGACGGATGAGCAGGGCGGATGCCTAGAGATCTTCGGTAGC
GACGATCAGTGCTTTCCACAGTTTCCAGTGCAGCGAAAGATCGCCCCCAA
AGACAACCAGTTTGCCTTCTTCAAGGTGGGCTCGCGCTCCTTCCACCAAG
TAGGCGAGGTTACTACATTCGACTACCCGCGTCTTACCATAAACGGGATG
GTTCCACGGCGATACCAATGAGGCCTTCGTGGCCGACTCCCTGCGCGCCT
TTCCCGCCTGAATTACCTGCAACCTGATGGCCTTAATAGGCCACCGCTTG
GCCTGTTTCTAACAACGTGTATCTAAAGGGGGCCACCCGCCGGAGCATCC
AAAGCGATCGAAGAAAACTCCGAGATTGTTTATACGAGTTCTTCAGCGAG
AGAATTCGAATGGCCCGTCCAGCTGTGTGATTCGGATTCTGATGCGAGAC
GGAACGCAAACGCCACACTATGAGGCTGATTGACACAGCCAAGCAATCTG
GTACTACTCGCACTGTCCGTACCCAGCATGTTGGATTGCGTCGCAGAATA
TTTCCGCCATCT
FMO02957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-RA | 1826 | CG44254-RA | 101..1152 | 34..1076 | 4990 | 99 | Plus |
| PIG-S-RC | 1764 | CG44255-RC | 101..158 | 34..91 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24916550..24917511 | 1045..88 | 4520 | 99.2 | Minus |
| 3R | 32079331 | 3R | 24917709..24917764 | 89..34 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:51:57 has no hits.
FMO02957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:49 Download gff for
FMO02957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RA | 73..1132 | 27..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:05 Download gff for
FMO02957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..1154 | 27..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:25 Download gff for
FMO02957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..1154 | 27..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:25 Download gff for
FMO02957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24916550..24917509 | 90..1045 | 99 | <- | Minus |
| 3R | 24917709..24917767 | 33..89 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:05 Download gff for
FMO02957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20742272..20743231 | 90..1045 | 99 | <- | Minus |
| arm_3R | 20743431..20743489 | 33..89 | 96 | <- | Minus |
