FMO02960.5prime Sequence
1235 bp (1013 high quality bases) assembled on 2008-07-02
> FMO02960.5prime
ACTTCGTATAGCATACATTATACCAAGTTATCAGTCGACATGGACCACCA
CACGTACGCCAAGAGCGGATCCAAGAAGTGGTCCGCGGAAGAGAAGCGCA
ACCTGGTGGTGCAGCGGATCGCGGCGGACGAGCTCTTCTCCCGCTACTCA
CCGAAGCACGCGGAGCCATGGAAAAAATTCAAGGAAATGGCCAAGATCGG
CGATTTCAGCGAGATTGCGCTACGCAAGCAGTGGTTCTCCATGGTGCAGC
GGTACCGCATCCACAAGGCCAACACACTGGGCGTCCCACTCAACAAGCAG
AGCATCGAGGAGCTGAACAAGGAATGGGAGTTTTTCGGCCTCATCCACGC
CTACATGAACCAGAAGACCGCCGACCTGCACTCGTACGCGCTCAAGGAGC
CGAATGTGGAGCAGCCGAACAATAACCTGGCCATCGCCAGTGTCTACTCC
TGCGACGAGGCGCAACTCTCGCCACTCATGCTGGGCGTGCTCAATGACCA
CAACTTTGGCGAACGCTCGCCGCCCAACGGATGCGACACCGATGACATGG
ACGAGTCCAACACGTCGCCCTGCCACGGGAACAGTGGCCACAGCAACAAC
GATGAGCTGGACAGGCTGCTGGCCGAGGCGACGGCGCGCAAGGATGCGGC
AGTTGGCGACGGCGAGGATGTGTGCATGCTGAGCAACACCAACTGCCACG
AAATGGAATGCGGCCCGGTGATGATTGGCGGCGAGGTGTCGCTATCCAAC
AGCAGATACAACGACTTCGAGGAGGCGACAGTGCCCACGGCAACGGCTGT
GAAGAGCGAGAAGCCGGAGAAGCCTATCCCGAAGGCGCGTAAATTGTTAA
GGAAACACCATCGCAAAGGTCTCAGCGAAAAGGAGAAGTATTACAGGCAC
CGCCGTCGCTACGGCAGCGAATGGAGAAGCGTCTGATGGGACTTGTGCAC
CGTGTGGGACACTGCTGAAGCAGTTTGCTCCCGACATGGATGTCCAGCCA
CTGTGGCCTGGGCAGCGATGTGACGCTCAGCTCGCAGCGCCAGCAGCAGT
GACGAGGAGAGGACGAGTTCTGAAGAGACGGAGGAGGATCAGAGCTTCAG
CAGAACAGCACCGATGCACTGGACTGGACACCGAGCTGGGAGTCGAGGTC
GATGCCCTGGACCTCAGTTGAAGCTCTGACATCGTTGGCGGCGCGGCCCA
GGATAGGGGTAATAACTAGATATAGTCCATAATGA
FMO02960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8010-RA | 1633 | CG8010-RA | 179..1314 | 38..1156 | 5120 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19267317..19268040 | 897..174 | 3620 | 100 | Minus |
| X | 23542271 | X | 19267079..19267254 | 1063..894 | 505 | 94.9 | Minus |
| X | 23542271 | X | 19268505..19268598 | 173..80 | 470 | 100 | Minus |
| X | 23542271 | X | 19268676..19268718 | 80..38 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:39 has no hits.
FMO02960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:45 Download gff for
FMO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 157..1313 | 26..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:58 Download gff for
FMO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 169..1325 | 26..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:09 Download gff for
FMO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 169..1325 | 26..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:09 Download gff for
FMO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19267318..19268040 | 174..896 | 100 | <- | Minus |
| X | 19268505..19268598 | 80..173 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:58 Download gff for
FMO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19161351..19162073 | 174..896 | 100 | <- | Minus |
| arm_X | 19162538..19162631 | 80..173 | 100 | <- | Minus |
