FMO02961.5prime Sequence
1223 bp (135 high quality bases) assembled on 2008-07-02
> FMO02961.5prime
TCGTATAGCATACATTATACGAAGTTATCAATCCACATGACTTTCGTTAA
CAAGCTGAGCAAAAGCTTCCGCTGGCTGCGCTGCTCGACATTGTGCGCAA
TTTTGTTTTATATGTTCTTCATTGGCCTGATCCTGCACAGCACCAGCCAG
AAGTTGCATCACCAGCTAAAGGAGCAGGGAACCAGCAGTAGCAGCAGCAG
CAGCAGCAGCAGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGTAGCACGC
AGGCAGACACAAAAATGGCGCCCAACGTGGGGCATAATGGCGCCCAACGT
TGGCCGAATACGCTGCAGGAACTGGAGCAGCAGCAACAAAAACACGAGCA
AAGCATGACACTCCAGCCTGTGGCAAACAATTTGGATTCGAGGAACGAGA
ATAACCATCGCCAACCCCATCCACAGTCGCAAAAAGTGCAAAATGCCAGC
AAATCCCCTAACCACCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGAA
TGAGAAGCAAATACTGGCAAAAGCTTTCAAACGTGCCGATCGCAGTCGCG
ATGGCATTCTGTCAATCCAGGAATTGGGGCAGTACATAAATCGCCGGATT
GTGGAGCACATTGATGAGGCGATTATGAACAATGCCCGCGAGTTCCGACG
CGTGGATATTGGTCCTGCGGATGGTCTGATCACCTGGGACGAGTACCACC
GCTTCTTCCTTAGGGAGCACGGCATGACAGAGGCGGACATCGATGAGCAT
GACGAGATTCGCCACACGGCGCTGAACCGCAAGTCCATGTAGTATATGAT
GAGGGACAAGGCCCGGTGGTCGGAAGCAACTCGAACCGATCTGTTCACAC
TGACCATCTATGAATACCTGAGTTTCCGCCATCCCAAGTCCAGTGTATTC
CAATCTCTTGGAGCTTGGTCGATGATCTGCTGGCCTATTCGATCAGGATG
GAAACGATCAACTAACCCTGGAAGAATTTTCGATCTGAATGTAGATGATG
ACGATGATCTGATGCAAAATCCTCTGATATCTAGACTTTGCTGGAAGCGA
ACCTTAGGTAGTTCATGTCGGATTCATTGATTAAGAATTAAGAATGCCAA
GACCGAATCGGGTGACCTAACTGAAATATGTGAATCCCCATAAACTCCTG
CGAAGGCTCAAGCATGCGGTCCCATTGTTCAACCTGGTGCTCACGAAAGA
CACTATGTGACAAGCCGTCTCTC
FMO02961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31475-RB | 2448 | CG31475-RB | 948..2042 | 37..1138 | 4615 | 95.5 | Plus |
| CG31475-RA | 2688 | CG31475-RA | 1188..2282 | 37..1138 | 4615 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19190080..19190576 | 37..533 | 2425 | 99.2 | Plus |
| 3R | 32079331 | 3R | 19200021..19200519 | 533..1031 | 2050 | 95.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6947 | 137..352 | 273 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6855 | 205..350 | 173 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6865 | 219..366 | 132 | 59.6 | Plus |
FMO02961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:54 Download gff for
FMO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31475-RA | 1179..2199 | 29..1050 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:39 Download gff for
FMO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31475-RA | 1181..2201 | 29..1050 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:02 Download gff for
FMO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31475-RA | 1181..2201 | 29..1050 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:02 Download gff for
FMO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19190073..19190576 | 29..533 | 98 | -> | Plus |
| 3R | 19200022..19200538 | 534..1050 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:39 Download gff for
FMO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15015795..15016298 | 29..533 | 98 | -> | Plus |
| arm_3R | 15025744..15026260 | 534..1050 | 95 | | Plus |
