FMO02962.5prime Sequence
707 bp (346 high quality bases) assembled on 2008-07-02
> FMO02962.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTCTGGCCAAGA
GCATAGTGTGCCTCGCCCTCCTGGCGGTGGCTAACGCCCAATTCGACACC
AACTACGCCTCCGGTCGTAGTGGAATGGTCCACCTCTTCGAGTGGAAGTG
GGACGACATCGCTGCCGAGTGTGAGAACTTCCTGGGACCCAATGGCTACG
CCGGTGTTCAGGTCTCCCCTGTGAACGAGAACGCCGTCAAGGACAGCCGC
CCCTGGTGGGAACGTTACCAACCCATCTCCTACAAGCTGGAGACCCGCTC
CGGAAAACGAGGAGCAGTTCGCCAGCATGGTCAAGCGCTGCAACGCCGTC
GGAGTGCGCCCCTACGTGAACTTGGCCTTCCACCCCTTGGCCGCCAACCG
GAGGCCCCTTCGGGACTGGGGGGCAGCCCCCCCACCCCCAAAAAAAAAAT
ATTCCGGAAGGCCCCTACCCCCCCCTGGGATTTAACCCAACCTTGGGCCT
TAAAAATAAAAAAACCCAAAAGGGGGCCAATTCAAGTTGGTGGTTGGGGC
ACCTTTACAGGGAATCTCTTTGGGGAAAAGGGGGGAAATTCCCAAACTTT
TTTTTTTCGGGGGGGGATTTCCGGGGCACCCCAACAAAGGGGGCCCACAC
ACCGCTTAATTGGCCCAAAAAAAAAAAACAACACGTCTGTCCTGTAGAGG
TGAGTAT
FMO02962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-p-RB | 1668 | CG18730-RB | 33..436 | 34..440 | 1735 | 95.6 | Plus |
| Amy-p-RA | 1595 | CG18730-RA | 33..436 | 34..440 | 1735 | 95.6 | Plus |
| Amy-d-RA | 1606 | CG17876-RA | 36..439 | 34..440 | 1660 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17119888..17120271 | 419..34 | 1665 | 96.6 | Minus |
| 2R | 25286936 | 2R | 17124799..17125182 | 34..419 | 1590 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:59:27 has no hits.
FMO02962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:49 Download gff for
FMO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..382 | 34..384 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:51 Download gff for
FMO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..382 | 34..384 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:27 Download gff for
FMO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..382 | 34..384 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:27 Download gff for
FMO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17124789..17125148 | 26..384 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:51 Download gff for
FMO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13012294..13012653 | 26..384 | 95 | == | Plus |
