FMO02963.5prime Sequence
1229 bp (644 high quality bases) assembled on 2008-07-02
> FMO02963.5prime
CGTATAGCATACATTATACGAAGTTATCAATCCACATGAAGGGCATCTGC
GGTGAGCAGCTCAACAATTGCATGCTCCTGGGCGACTGTGAGAATAGTGA
ACATGGCACAGAACTGCCCGGTGATTTTATCGGGGAGCCAGTGGAAACGG
AGTCCGGAGGCGGAATGGGCGGTAGTCTGGCCCTAGCCGCCCGTCGTATC
CAAAGCCGCCAGGTGCACAGCATGGCCGTGCGAACGGGTAGTGCGTATGA
TACCCTGAAGCGACCATATCGGCATGATAAATGTCGTGGTCGTTGGGCCA
AATCGGCGGACTTTTACTTTGCCAGCTGCACACATGCCTTCAGTTCGCTG
ATCTTTTCGGAGCTCTCCACCTTTGGAATACTTCATGGGGGTTGGCTTTT
GTTTATAATCCCCTACCTGATGGGAATGCTATTTTACTCGCTGCCAATAT
TTTTGATCCAAGCCTTTTTGGGACAGTTTTCAAGTTCTGGAACCATATCA
GCATTTCGCGTGACGCCAATATTTAAAGGCATTGGCTACCCCATTCTGCT
CCTCAATCTGGGAACGCTCACCTATTACAGTATAGCAGCTGTAGTGCCCC
TCATATATACCGTGAATTCAATACACCCAGTGATACCCTGGATGAGTTGC
AACAATAGTTGGAATACCCAGGAGTGTTCCTTGCACGAGAACTACGACGT
CGATTTCGCCGTCGCCGTTATCTTCACCTTGGCCCTCGCCATGGGCGTGC
AGTCGTCTGTGATCCCCCTGCTGTCCCAGGTGGCTGGACATGGACTGTCC
TACACCGCCGTTTCCGGACCCGCTGTGGTGGCCTCTCCCTGGGCCGTTCC
CGCCGCCCACTGGCCTGCTGCCGTGACGTGGCTTCGTGGCCTCCGGCAGC
GATACACGCCGCCGCTCCTGCCGTGCTAGCTGCTCCTGCTCCAGCTGTAG
TGCTGCATCATGCTCCCTCAGTCGTCGTGGCACCAGTGCCTCACAGTGAC
GTCTACACTGCCAGACCCGTTGTTGCAATTCACACCGATCCTCTGCTGAC
ACATCCTCAGTCAATGCTGCTCCCGCACCCGGAACTTGTAGGAAGTATAA
CGCATCAATCCCTTGTTCATGGACCATGCTCTGCCGGTAACTGCCATGAT
GGGGGAGCGCACTGGATCCTGAACCGTTAGGATAACTGGATAGTATAGCC
ATATATAGACACCGAGTATTCGTCAATCG
FMO02963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31904-RB | 3572 | CG31904-RB | 2110..3242 | 34..1154 | 4860 | 96 | Plus |
| CG31904-RD | 1943 | CG31904-RD | 481..1613 | 34..1154 | 4860 | 96 | Plus |
| CG13796-RD | 2711 | CG13796-RD | 444..1114 | 34..704 | 3265 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7730198..7730560 | 396..34 | 1770 | 99.2 | Minus |
| 2L | 23513712 | 2L | 7736338..7736700 | 396..34 | 1770 | 99.2 | Minus |
| 2L | 23513712 | 2L | 7734823..7735206 | 1085..705 | 1400 | 92.2 | Minus |
| 2L | 23513712 | 2L | 7741016..7741357 | 1045..705 | 1315 | 93 | Minus |
| 2L | 23513712 | 2L | 7729180..7729357 | 704..527 | 875 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7735320..7735497 | 704..527 | 875 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7729418..7729550 | 529..397 | 635 | 98.5 | Minus |
| 2L | 23513712 | 2L | 7735558..7735690 | 529..397 | 635 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:00 has no hits.
FMO02963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:08 Download gff for
FMO02963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RB | 2088..3150 | 26..1085 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:07 Download gff for
FMO02963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RD | 473..1535 | 26..1085 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:28 Download gff for
FMO02963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RD | 473..1535 | 26..1085 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:28 Download gff for
FMO02963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7736338..7736708 | 26..396 | 98 | | Minus |
| 2L | 7734823..7735206 | 705..1085 | 94 | <- | Minus |
| 2L | 7735320..7735495 | 529..704 | 99 | <- | Minus |
| 2L | 7735559..7735690 | 397..528 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:07 Download gff for
FMO02963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7734823..7735206 | 705..1085 | 94 | <- | Minus |
| arm_2L | 7735320..7735495 | 529..704 | 99 | <- | Minus |
| arm_2L | 7735559..7735690 | 397..528 | 98 | <- | Minus |
| arm_2L | 7736338..7736708 | 26..396 | 98 | | Minus |
