FMO02964.5prime Sequence
295 bp (295 high quality bases) assembled on 2008-07-02
> FMO02964.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGCCCAATTCGTAC
CAGAGTCCGCAGCTGAACAAGCAGGGCAATAGCAATAGCACCACCACCAG
CAGTACCTCAGTAAGGAGCACCACAGTGGTGCAACAGCAACATCACCAGC
AACAACATCAGCAAATCAAGCCAAGTATTGTGGAAACCCCGGCGACACCA
CAGCCACAAGTTCCGCCCGAAGACGAGATACCCCACAACATAGTGTTCAA
CAATGTGAGCGCCTTTACATCGATGAGCAGGCGAAATCACGAGGA
FMO02964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34417-RU | 17577 | CG34417-RU | 14664..14925 | 34..295 | 1310 | 100 | Plus |
| CG34417-RT | 16863 | CG34417-RT | 14664..14925 | 34..295 | 1310 | 100 | Plus |
| CG34417-RR | 16701 | CG34417-RR | 14664..14925 | 34..295 | 1310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6582507..6582768 | 34..295 | 1310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6897 | 67..240 | 212 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6895 | 49..209 | 202 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2416 | 57..163 | 201 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6970 | 57..230 | 185 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2429 | 28..164 | 181 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6916 | 47..164 | 175 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2410 | 52..163 | 174 | 64.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1183 | 36..181 | 168 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6844 | 85..209 | 161 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2478 | 57..162 | 158 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2688..2827 | 11..163 | 149 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2884..2981 | 66..164 | 141 | 64.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1135 | 67..164 | 140 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6808 | 132..209 | 137 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1137 | 133..208 | 135 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2408 | 114..209 | 133 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6775 | 114..164 | 133 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2663 | 132..169 | 119 | 83.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 980..1022 | 131..173 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1558 | 132..163 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1593 | 131..177 | 115 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2350 | 132..163 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2637 | 131..171 | 115 | 75.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 122..163 | 111 | 73.8 | Plus |
FMO02964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:16 Download gff for
FMO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RH | 14644..14913 | 23..294 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:06 Download gff for
FMO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RR | 14655..14924 | 23..294 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:56 Download gff for
FMO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RR | 14655..14924 | 23..294 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:56 Download gff for
FMO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6582498..6582767 | 23..294 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:06 Download gff for
FMO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6476531..6476800 | 23..294 | 98 | | Plus |
