FMO02965.5prime Sequence
873 bp (873 high quality bases) assembled on 2008-07-02
> FMO02965.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCACCAC
GACAACAACACAGCCGCCAAGAAACTGCGTTGTCCAGCGACCACGTCAGT
CAGATCAACTTATTCGGGAAGGCAGCAGCAAGCGAATCTACTCCTTGGAC
GACGTCGAGTGCAGTGAGCTGTGCAGCTGCGGCGAGTCGCTCATCCTCAC
CTGCCACGCCCTCTGCGTGCCATTCGCCCCCTGCCGCACCGCCCTCGCCT
TTTACAGCCACGCCTCCCCCGCCTACCAGGCGTTCCGCGGACGCTGTTTG
TGCTACTCGGGCCGCTTCATCTGCATGAAACCGCCGCTCGGGGAGTACAT
TCTGCCAGGTGGGATATTCCTGCTGCTCGGATACAGTGCCGCGGATGAGG
CGCTGCTGAGGCCCCACACCAACCTGGGGGTGCAGGATGCCGTGCGGGCC
CTGCAGCAGTACGTAACCACATACATCGATAATCAGACGCAGTGCACCCT
CACGCTGTTCAATATGACCGAGGAGAACATCATCATTGCTGCGCGGCTGC
CACACGATGGCAAACTGAAGGATATTGAGCTGCTGCGTAAGGAGAAGGAC
GAGTGCACCGCGATACTGAAGACCATCAGTCATCAAATCAATAGCGAGCA
CAGCGAGCTCCAATCCCACCGACTGCTGAGCATTTTCAAAATGTCCGAAG
TCGAGGTCGTTTGGCCCGAGAGCACAAGTGCGGCGGCCAGAAGTGGACAT
GGTCCTGGCCAGTTTGCCGGATGCGACCGGCTGCTCTACGCGGCCATGCT
CGCGCTGGCGTATCTCTCCAGCTGGACAACGCTGCGTATGAGTGATGTGG
CGACAGCAAGCTTTCTAGACCAT
FMO02965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RJ | 6630 | CG43224-RJ | 3494..4309 | 40..855 | 4080 | 100 | Plus |
| Gfrl-RI | 6279 | CG43224-RI | 3143..3958 | 40..855 | 4080 | 100 | Plus |
| Gfrl-RH | 7235 | CG43224-RH | 4099..4914 | 40..855 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20381317..20381576 | 855..596 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 20383108..20383333 | 361..136 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 20382168..20382298 | 486..356 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 20381961..20382076 | 598..483 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 20383804..20383868 | 135..71 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:14 has no hits.
FMO02965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:52 Download gff for
FMO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-RA | 108..937 | 32..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:28 Download gff for
FMO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4092..4921 | 32..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:50 Download gff for
FMO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4092..4921 | 32..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:50 Download gff for
FMO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20381310..20381574 | 598..861 | 98 | <- | Minus |
| 3R | 20381962..20382072 | 487..597 | 100 | <- | Minus |
| 3R | 20382168..20382295 | 359..486 | 100 | <- | Minus |
| 3R | 20383111..20383333 | 136..358 | 100 | <- | Minus |
| 3R | 20383804..20383868 | 71..135 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:28 Download gff for
FMO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16207032..16207296 | 598..861 | 98 | <- | Minus |
| arm_3R | 16207684..16207794 | 487..597 | 100 | <- | Minus |
| arm_3R | 16207890..16208017 | 359..486 | 100 | <- | Minus |
| arm_3R | 16208833..16209055 | 136..358 | 100 | <- | Minus |
| arm_3R | 16209526..16209590 | 71..135 | 100 | <- | Minus |
