FMO02966.5prime Sequence
1225 bp (1040 high quality bases) assembled on 2008-07-02
> FMO02966.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATAAAGTTTGTC
AGACAGAAAAATCGCGAAAATACACTGAGGGAATCGAAAAATTTTATGCG
TAAAAAGCGTGAATCGAATGACTCTGGCACCGAATCTGATGGTGAACTCC
TCGATGTGGAAAACCAACGTCACTTAGACGTGGATATGGAAACTAGTGTT
GCTGGCCAAAAACCAATAGCTTCTGCAATGATGTGTCACCAGCAGACGTC
GTCATCCTGCGCCCATCTCATGTACGACCAGCACAGTTCCGAGGAGGAGT
TGGAGGTGATCAACGGGCCGTCCTCGCAGGCGGGTCAGCATCCCGGAACG
GCGGCCACGGGCTCATCGTGTGCCTCCCGGATCTCGAATCGCGGATGCAC
CTCCTCGCTGGACACGGAGGCGCCCTACGAGGAGCGGGCCACCACCTCCA
ACTCGAAGCGTTCTAGCTCCACGCTGATGGTGGAGAACCGCAAGCGATCG
CTGGCCCACAGCTCCGACGATGAGTTGCGCAACTCGCTGGAGCCGATATT
GACGCCCGTGAATTTTCGCACATCGCCGCCATTGGAGGCATTCAAGCCAA
ATCGTAGCCATATGATGTTCCGCTCCACAACGCCACTGATATTATCGGAG
GCCCGATGTGGCATCGAAAATATTAAATTATGTGATAATAGTGTAAACGA
GGAGAATGGTGACAACGGCGGTGGCGGTGGCGCGGCCAATAGCAGTAAGT
GCGCCAAGATTGGCGCACTGGCAGGGAATGCCAGCGGAACTGTGGCCGCA
CCGGAAACGGAAACGGCGGCAACGAGAATGAGCCGAGTGTGATCAAGGCG
TGCAGCAGCTCGCTAAAGATGAGCAACAGCAGCCACCACATTTACCAGCC
GCAGCCGAAATATAGTTTCCACTACACAGCTCGCGGAGCAGTCCGGCCAG
CACACTGGCCTGGATATTGGAGTGCGTTCGGTCAGTCGCGGCGAAACTGG
TTCACTGCGCATATCGCCCAGGCGGCGACCCAGTACAATGCAGTGGGTGC
AGCCGGGGGCGCCAAAACAATATCACATCGTCGGCATCACATCATCAAGC
CAACAACGAACAAATGCTTCATTCGCGATGCCGTACGGTCACGCGTACGC
ACTGAACTGCACGGACGGATCGGGCCTGTTTGAATTGGATAAGTGCGCAG
GTATATTTCTCGACGCTTTCATGAG
FMO02966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Reph-RB | 2928 | CG3920-RB | 1068..2163 | 35..1118 | 5015 | 98.1 | Plus |
| Reph-RA | 3750 | CG3920-RA | 187..1209 | 108..1118 | 4650 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3807523..3808097 | 523..1089 | 2330 | 96.5 | Plus |
| 2L | 23513712 | 2L | 3807133..3807461 | 196..524 | 1645 | 100 | Plus |
| 2L | 23513712 | 2L | 3806967..3807058 | 106..197 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 3806749..3806821 | 35..107 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:39 has no hits.
FMO02966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:09 Download gff for
FMO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k16918-RB | 1051..2146 | 35..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:42 Download gff for
FMO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reph-RB | 1068..2163 | 35..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:56 Download gff for
FMO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reph-RB | 1068..2163 | 35..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:56 Download gff for
FMO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3806749..3806821 | 35..107 | 100 | -> | Plus |
| 2L | 3806969..3807056 | 108..195 | 100 | -> | Plus |
| 2L | 3807133..3807461 | 196..524 | 100 | -> | Plus |
| 2L | 3807525..3808083 | 525..1076 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:42 Download gff for
FMO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3806749..3806821 | 35..107 | 100 | -> | Plus |
| arm_2L | 3806969..3807056 | 108..195 | 100 | -> | Plus |
| arm_2L | 3807133..3807461 | 196..524 | 100 | -> | Plus |
| arm_2L | 3807525..3808083 | 525..1076 | 97 | == | Plus |
