FMO02967.5prime Sequence
1241 bp (1022 high quality bases) assembled on 2008-07-02
> FMO02967.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAACTGCA
TTGACCATGGTGAAAACGGGTGGTAAATACGCCAACGAGAAATTCTTCGG
GGTGAGGCATGTGCAGTGCATCCTGTGCTTCTTCTGCCTCGCGATGAGCT
ACGCTTGGCGGGTGAACCTCAGTGTGGCCCTGGTGGCCATGACGGACAAC
AGCACCTCCCTAGCTCAGAACAACACCAATACCGGAGTGGCGCCAAGCGA
ACCCGGTTTTGATTTCTTTAATTCCGAGCGCTACTACAACTTCACCCAGA
AGGAGAAGGGCAACCTGCAGGCCAGTTTCTTCTTTGGCTACATCGTGACC
CAAGTGCCAGGTGGTTATATCGCCCAGCGCTATGGAGCCAAGACCATGCT
GATGTACGGATTGGGTATAGCCGCTTTGATCACGATGCTCTCGCCGATGT
CCCTGCAATTCGGATGGGTCGCCCTTGCCGTGATGCGATTCGTGATGGGC
CTGGCCCAGGGTGCAGTACATCCGGCCACGCATGCGCTTTTGGCCAAGTG
GTCGCCCGCGGATGAGCGAGGAATGCTGGGAACACTCTGCTACTCGGGCG
CCCAGTTCGGAACGGTGGTGATGCTGGCCACTAGCGGTTTCATTGCCGAC
TCCGTCTTGGGCTGGCCGAGTATCTTCTATTTGGGCGGAGCATGCGGCTT
TATTTGGATGGTTTTCTGGTACCTATTCTCGGCCAGCACGCCGGAGGAAC
ACCGTCTGATTTCGCCCGGAGAGCTGAAGTACATTACGGATTCGCGGAGC
GATGGCAAGATGCAATCCGCCGAGAAACTGGCACCCACGCCCTGAAAGGC
CATCTTTAGTTCCCTGCCCTTCCTGTCTCTGCTGGTGGTGCACTGCCACC
CACATTTTTCGGTTACTGGCTGCTGCTCATGCAGATTCCCACGTACATGA
AGAGATCTACCACGTGACATCAGAAGGGTTGCGCTGCTCTCCTCCCTACC
CTACATGGTGATGCTGCCTCCTCACTTCTTTTTCGTCTGGCTATCCAAGT
GCTCCAAAAGAAGAGCATGTTCTCTGTTCTTCACCGCAGATTTTCACAGC
ATGGCCATTGATACTATGCTCTGCTGATCGCCTTAGGGTTATGTGCCGGC
GATATGCTTCACGTGGCGGTTAACTGTCTCCCTACGGTGGAATCACGGAA
CCACTATCTGGTCTTCAGGGAAACCCACTCATATGTGTCTC
FMO02967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)08717-RC | 2337 | CG15095-RC | 338..1533 | 37..1216 | 5140 | 96.8 | Plus |
| l(2)08717-RA | 2048 | CG15095-RA | 338..1533 | 37..1216 | 5140 | 96.8 | Plus |
| l(2)08717-RB | 2999 | CG15095-RB | 1289..2484 | 37..1216 | 5140 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18798007..18798794 | 1063..277 | 3535 | 98 | Minus |
| 2R | 25286936 | 2R | 18799073..18799264 | 278..87 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 18802018..18802068 | 87..37 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:39 has no hits.
FMO02967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:10 Download gff for
FMO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RA | 329..1478 | 31..1174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:59 Download gff for
FMO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RB | 1286..2435 | 31..1174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:31 Download gff for
FMO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RB | 1286..2435 | 31..1174 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:31 Download gff for
FMO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18797888..18798792 | 279..1174 | 96 | <- | Minus |
| 2R | 18799073..18799263 | 88..278 | 100 | <- | Minus |
| 2R | 18802018..18802071 | 31..87 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:59 Download gff for
FMO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14685393..14686297 | 279..1174 | 96 | <- | Minus |
| arm_2R | 14686578..14686768 | 88..278 | 100 | <- | Minus |
| arm_2R | 14689523..14689576 | 31..87 | 94 | <- | Minus |
