FMO02968.5prime Sequence
900 bp (900 high quality bases) assembled on 2008-07-02
> FMO02968.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCCTCCATC
ATACAGCGATTTGGGCAAACAGGCTCGCGACATCTTCAGCAAAGGCTACA
ACTTTGGCCTGTGGAAGCTCGATCTGAAGACTAAGACCTCGTCGGGCATT
GAGTTCAACACAGCCGGACACTCCAACCAGGAGTCTGGAAAGGTCTTCGG
CTCCCTGGAGACCAAGTACAAGGTCAAGGACTACGGCCTGACCCTCACCG
AGAAGTGGAACACAGACAACACGCTGTTCACCGAGGTTGCTGTCCAGGAT
CAGCTCCTCGAGGGTCTGAAGCTGTCCCTGGAGGGCAACTTTGCTCCTCA
GTCTGGAAACAAGAACGGCAAGTTCAAGGTTGCCTACGGCCATGAGAACG
TCAAGGCCGATTCGGATGTGAACATTGATCTGAAGGGCCCCTTGATCAAT
GCCTCTGCCGTGCTTGGCTACCAGGGATGGTTGGCCGGCTACCAGACCGC
ATTTGACACACAACAGTCCAAGCTGACCACCAACAACTTTGCCCTTGGCT
ACACCACCAAGGACTTTGTTCTGCACACAGCTGTCAACGATGGCCAGGAG
TTCAGCGGCTCGATCTTCCAACGCACTTCGGACAAGCTGGATGTGGGTGT
ACAGCTGTCGTGGGCCAGCGGCACCAGCAACACCAAGTTCGCCATCGGCG
CCAAGTATCAGCTGGATGATGATGCCAGCGTGCGCGCTAAGGTGAACAAC
GCCAGCCAGGTGGGTCTGGGCTACCAGCAGAAGTTGCGCGACGGAGTCAC
CCTGACCCTGTCCACGCTGGTCGATGGCAAGAACTTCAATGCCGGCGGCC
ACAAGATCGGTGTGGGTCTGGAGCTGGAGGCCGCAAGCTTTCTAGACCAT
FMO02968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| porin-RC | 2625 | CG6647-RC | 1332..2179 | 35..882 | 4240 | 100 | Plus |
| porin-RE | 1387 | CG6647-RE | 96..941 | 37..882 | 4230 | 100 | Plus |
| porin-RD | 1525 | CG6647-RD | 36..881 | 37..882 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10848544..10848863 | 356..37 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 10847871..10848168 | 882..585 | 1490 | 100 | Minus |
| 2L | 23513712 | 2L | 10848241..10848469 | 584..356 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:57 has no hits.
FMO02968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:50 Download gff for
FMO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| porin-RC | 1998..2855 | 29..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:31 Download gff for
FMO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| porin-RC | 1332..2183 | 35..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:28 Download gff for
FMO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| porin-RC | 1332..2183 | 35..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:28 Download gff for
FMO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10848241..10848468 | 357..584 | 100 | <- | Minus |
| 2L | 10847867..10848168 | 585..887 | 99 | <- | Minus |
| 2L | 10848544..10848871 | 29..356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:31 Download gff for
FMO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10847867..10848168 | 585..887 | 99 | <- | Minus |
| arm_2L | 10848241..10848468 | 357..584 | 100 | <- | Minus |
| arm_2L | 10848544..10848871 | 29..356 | 99 | | Minus |
