FMO02969.5prime Sequence
1000 bp (1000 high quality bases) assembled on 2008-07-02
> FMO02969.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCCGTAAATGTA
CTGGACTACGATCACTTCGCCATTAGCGCCATCGTGGTGGGGAGCCTGCA
GTTGGTCTTCTTTCTGATCAACTCTGTGCTCCAAATGGACAAGCTGACGG
ACTTTGCCGGCGGCGTTAACTTCATCATCATCTCCCTGCTCACTTTCTTT
CTCGGCCAAATCGATCGTCCATCGAAGGCCTACGATAGTCGCCAGCTGAT
GGTCACGCTCTTCGTTTGCCTGTGGGGCGCTCGGCTGTCCGGATATTTAC
TATATCGAATCGTAAAGTTGGGTCGCGACAAACAGTTCGAGGATACCCGT
CGCAACATCATCCGCTATGCGGTCTTCTGGACCTTCCAGGCTGTTTGGGT
GTACATTGTGTCACTGCCTGTAATAATAATTAATTCACCGCGCCACTCGC
AGCCGCGTGCCCCAAAGACCATGACCACACTGGACTCCACGGGCACGGGC
ATGTTCATCGTTGGCCTGCTGGCGGAGACCTATGCGGATCTGCAGAAGTT
CTCCTTCCGCCAGGATCCGGCCAATCAGGGCAAGTTCTGCAATGATGGAC
TGTGGAGCGTGTCGCGGCATCCGAACTACTTTGGCGAAGTGGTCATCTGG
TGGGGCATCTTTGCCATATCCCTCAATGTGATCAGTGGCCACGAGTGGGT
GGCGATTGCCTCGCCCATTTTCACTACGATGATCATTCTCTTTCTGTCGG
GGATTCCCCTGCGAGAACGAAGCGCCGATGAGAAGTACAAAGATCAACTG
GAGTACCGGAAGTACAAAGCCTCCACCTCGCCACTGATACCAGTGCCTCC
TGCTGTCTACGTGGAGGTGCCCAGTGCTTTGAAGTTCATCCTGTGCTGCG
AGTTCCCCATCTACGATTCGATGCGAATTCAAAAGGACCTCAGTCCATAC
TCCCTGTCCATAGCACGCTCCCACTCGCACATCGCAAGCTTTCTAGACAT
FMO02969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6282-RD | 3303 | CG6282-RD | 690..1637 | 36..983 | 4740 | 100 | Plus |
| CG6282-RC | 3499 | CG6282-RC | 886..1833 | 36..983 | 4740 | 100 | Plus |
| CG6282-RB | 3611 | CG6282-RB | 998..1945 | 36..983 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8614600..8614810 | 388..598 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 8614867..8615063 | 597..793 | 985 | 100 | Plus |
| 3L | 28110227 | 3L | 8610165..8610357 | 36..228 | 965 | 100 | Plus |
| 3L | 28110227 | 3L | 8615219..8615408 | 794..983 | 950 | 100 | Plus |
| 3L | 28110227 | 3L | 8613656..8613820 | 226..390 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:16 has no hits.
FMO02969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:12 Download gff for
FMO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6282-RB | 991..1949 | 28..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:38 Download gff for
FMO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6282-RB | 991..1949 | 28..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:37 Download gff for
FMO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6282-RB | 991..1949 | 28..989 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:37 Download gff for
FMO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8610158..8610356 | 28..227 | 98 | -> | Plus |
| 3L | 8613658..8613819 | 228..389 | 100 | -> | Plus |
| 3L | 8614602..8614809 | 390..597 | 100 | -> | Plus |
| 3L | 8614868..8615063 | 598..793 | 100 | -> | Plus |
| 3L | 8615219..8615412 | 794..989 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:38 Download gff for
FMO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8603258..8603456 | 28..227 | 98 | -> | Plus |
| arm_3L | 8606758..8606919 | 228..389 | 100 | -> | Plus |
| arm_3L | 8607702..8607909 | 390..597 | 100 | -> | Plus |
| arm_3L | 8607968..8608163 | 598..793 | 100 | -> | Plus |
| arm_3L | 8608319..8608512 | 794..989 | 98 | | Plus |
