FMO02970.5prime Sequence
1245 bp (1062 high quality bases) assembled on 2008-07-02
> FMO02970.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAGAACCAGGA
GAACAACGAAAATTCGTATTGGGACGCTGTTGTATTTTCCACTGGCGCGG
GAAGGCTTCAATAATTATACCCTTGATCACACTGCCAATTCTTATTTATG
GCTTTCAGACCGACATGGCCGAGTTCAAGTGCCTGTGGCTTATTGTTACC
ATGGCCCTGCTGTGGATCACCGAAACCCTACCGATATATGTCACGGCATT
GTTTCCCCTTGTCTTTTGCCCTCTCCTTGGTCTTGTGAATGCCTCTATAG
TCTGCAAACAGTACTTCACCGACACCATTGTGGTATTCCTTGGTGGGCTT
ATTGTGGCCTTGGGAATTGAGTACAGTAATCTACACACCAGAATTGCCCT
GAGGGTCATTCGGATTGTCGGTGGAAGTCCTAGACGTTTATTCGTAGGCT
TGATGAGCGTGAGCACGTTTATGGGATTGTGGATATCCAACTCAGCCGGA
ACGGCCATGATGTGCCCCATTGTCAAAGCGCTGGTCAATGAATTGGATAC
CAACAAAATATTTCCCGTTTATATGACGCAAGAGGAAGAACCAGTAGAGG
AGGGAGAACCACCACATCCGTCGAAGATAACAGTAGCCTTCTACGCTGGC
ATAGCCTACGCCTCCTCCATTGGGGGACTGGGAACACTGATTGGCACAGG
AACGAATCTGGTCTTTAGGGGCATATACACGGAGCGATTTCCCACTTCTA
CGGTGGAGATTACATTTGCCAACTTTATGTTCTACTCGATACCCTTGATG
GTGATTGTAAACGTTACGCTGGTTATCATAGCTTTCCTCATCACGCACAT
GGGACTGTTTCGACCAAATAGTAAAACCGGTAAAATCATTGCGGAGGCCA
CACAACAGGAAACTGATGGAGGATGTTTTGCGACAGCGCCATATTGATTT
GGGCCCATGAGCTGTCATGAAATCAAATGGCCATCGCCTTTGCTTTATGA
TATGCTCCTAATTACCCGCAGGCCGGGAATCGTTCCGGGTGGAGCGATTT
GATCAATAGAAGGTAGTGGGGAGGGCATCGGACTTGATTATGTTCTACCT
GATTTTTGCCCTGCAACCATATACGTCTTCCAGTCAGGTCCGAAAAGGTT
CGTACGGCAAGCATCGCAGTGCAATACGGAAATGTAAGCCAATCCTGACT
AATATCTCTCTGCCTGTGGGAGACACTTGCCTGGGCCGCATGAGC
FMO02970.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-2-RB | 1855 | CG33933-RB | 69..1158 | 36..1114 | 5040 | 98.3 | Plus |
| Indy-2-RA | 4064 | CG33933-RA | 98..1187 | 36..1114 | 5040 | 98.3 | Plus |
| CG33934-RE | 4064 | CG33934-RE | 98..1187 | 36..1114 | 5040 | 98.3 | Plus |
| Indy-2-RA | 4064 | CG33933-RA | 2552..2696 | 480..624 | 260 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20044118..20044452 | 734..1061 | 1295 | 97.3 | Plus |
| 3R | 32079331 | 3R | 20043283..20043432 | 287..436 | 750 | 100 | Plus |
| 3R | 32079331 | 3R | 20043934..20044060 | 608..734 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 20043103..20043219 | 171..287 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 20043624..20043739 | 436..551 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 20042934..20043047 | 58..171 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 20043822..20043877 | 552..607 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:14 has no hits.
FMO02970.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:51 Download gff for
FMO02970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-2-RA | 98..1202 | 36..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:50 Download gff for
FMO02970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-2-RB | 69..1173 | 36..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:30 Download gff for
FMO02970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33934-RE | 98..1202 | 36..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:30 Download gff for
FMO02970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20044118..20044455 | 734..1062 | 96 | -> | Plus |
| 3R | 20042854..20042876 | 36..58 | 100 | -> | Plus |
| 3R | 20042935..20043046 | 59..170 | 100 | -> | Plus |
| 3R | 20043103..20043219 | 171..287 | 100 | -> | Plus |
| 3R | 20043284..20043432 | 288..436 | 100 | -> | Plus |
| 3R | 20043625..20043739 | 437..551 | 100 | -> | Plus |
| 3R | 20043822..20043877 | 552..607 | 100 | -> | Plus |
| 3R | 20043934..20044059 | 608..733 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:50 Download gff for
FMO02970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15869347..15869461 | 437..551 | 100 | -> | Plus |
| arm_3R | 15869544..15869599 | 552..607 | 100 | -> | Plus |
| arm_3R | 15869656..15869781 | 608..733 | 100 | -> | Plus |
| arm_3R | 15869840..15870177 | 734..1062 | 96 | -> | Plus |
| arm_3R | 15868576..15868598 | 36..58 | 100 | -> | Plus |
| arm_3R | 15868657..15868768 | 59..170 | 100 | -> | Plus |
| arm_3R | 15868825..15868941 | 171..287 | 100 | -> | Plus |
| arm_3R | 15869006..15869154 | 288..436 | 100 | -> | Plus |
