FMO02971.5prime Sequence
1227 bp (1020 high quality bases) assembled on 2008-07-02
> FMO02971.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGCCATC
ATCATGACGACCCTGCCCAACCTGACAACGGATGCAGGTGACAGCAGCTT
CTGGCTAACCGGTGCCCTCTCGCTCTCCGAGATGTTGGCCAACTCGAGCC
ACAGCCATTCCACTGGGAGCACAACCTCGACGGCTGGGAGTTCGGCCACC
GAATCATCCGCTGTGAATGTAGGCAAGGACCACGACAAGCACGTGAATGA
CAGCGTTTCCACGGGTCTGAGCAATTACAGTAATTACCCCAGCTACATTC
ACTACAGGGACAAGTACGACCTGAGCTACATTGCCAAGGTGAATCCCTTT
TGGCTACAGTTCGAGCCACCTAAGTCGAGCACCTTCCTGATTATGGCCGC
CCTGTATTGCCTGATTTCGGTGGTGGGATGTGTGGGCAATGCGTTCGTCA
TCTTTATGTTTGCCAACCGCAAATCTCTGCGGACTCCTGCCAATATCCTG
GTGATGAATCTGGCCATCTGCGACTTTCTGATGCTCATCAAATGCCCGAT
TGCCATTTACAATAACATCAAAGAGGGTCCAGCTTTAGGAGACATTGCCT
GTCGCCTCTATGGATTTGTGGGTGGCCTAAGTGGCACCTGTGCCATCGGT
ACCCTCACCGCCATCGCTTTGGATCGGTACAATGTGGTGGTGCATCCACT
GCAACCGCTGAGACGCTGCTCCCGCCTGCGATCCTACCTGATCATCCTGC
TGATCTGGTGCTACAGCTTCCTGTTCGCTGTGATGCCGGCCCTGGATATC
GGACTATCTGTCTATGTGCCAGAGGGCTTCCTCACCACCTGCAGCTTCGA
TTATCTGAACAAGGAGATGCCAGCTCGCATTTTCATGGCACTGTTCTTTG
TGGCTGCCTACTGCATTCCACTGACCTCCATTGTGTACTCCTACTTCTAT
ATACTGAAGTGATCTTCACAGCGAGTCGAATACATCGAACAAGATAAGCC
CAAACGAGCAGAGTTGGCCTTCATTGTGCGCTATCATGGTTTGTGTTCCT
GGCCTGTCACCGTACGCCATCGTTGCCATGATGGTGTCTTCGCCTGAAAA
GCAATACGCCACTTGAATGATGAATCCGCGCTCTTCTGCAAGAAAGTCTG
CCTGGCTGAATCCTACTTATAGCGCACACCATCAGGATCCTGTCAGGTCG
AAGTCCTCTCCTCGGAAGCCGAGAAGT
FMO02971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-RA | 4014 | CG5638-RA | 785..1933 | 38..1168 | 5085 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12166377..12166875 | 1084..597 | 1940 | 96.8 | Minus |
| 3L | 28110227 | 3L | 12167238..12167565 | 597..270 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 12168142..12168375 | 271..38 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:51:52 has no hits.
FMO02971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:53 Download gff for
FMO02971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 778..1927 | 32..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:02 Download gff for
FMO02971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 778..1927 | 32..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:22 Download gff for
FMO02971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 778..1927 | 32..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:22 Download gff for
FMO02971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12166311..12166874 | 598..1143 | 95 | <- | Minus |
| 3L | 12167238..12167563 | 272..597 | 100 | <- | Minus |
| 3L | 12168142..12168380 | 33..271 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:02 Download gff for
FMO02971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12159411..12159974 | 598..1143 | 95 | <- | Minus |
| arm_3L | 12160338..12160663 | 272..597 | 100 | <- | Minus |
| arm_3L | 12161242..12161480 | 33..271 | 98 | <- | Minus |
